Thanks Herve!
I can confirm that after updating to IRanges 2.13.24, GenomicRanges 1.31.18 and
Biostrings 2.47.9 all works again.
thanks, jo
> On 9 Feb 2018, at 10:31, Hervé Pagès wrote:
>
> Hi Johannes,
>
> This should be fixed by now.
>
> I also committed a small change to ensembldb (commi
Hi Johannes,
This should be fixed by now.
I also committed a small change to ensembldb (commit
e4b9ffc54a35d8f4d8c398b94a53e0b65b48cbab) to fix a problem
introduced by some recent changes to GenomicRanges so ensembldb
should turn green again on Saturday's build report.
Let me know if you still
OK, seems we're getting closer - just updated all packages. Now the error is:
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function 'windows' for signature
'"DNAString"'
my sessionInfo:
> sessionInfo()
R Under development (unstable) (2018-01-08 r74099)
Dear all,
one of the unit tests in ensembldb is failing because of a problem in
GenomicFeatures::extractTranscriptSeqs (I guess):
library(BSgenome.Hsapiens.NCBI.GRCh38)
bsg <- BSgenome.Hsapiens.NCBI.GRCh38
library(EnsDb.Hsapiens.v86)
all <- extractTranscriptSeqs(bsg, EnsDb.Hsapiens.v86)
Error i