Re: [Bioc-devel] RangedData objects deprecated

2019-12-05 Thread Pages, Herve
On 12/4/19 17:39, Vincent Carey wrote: > The RangedData objects are still viable with the software you are using, > but trying > to set colnames will trigger an error. In Bioc 3.11 you won't even be able > to use > the RangedData class at all. So an intervention is needed now. > > The

Re: [Bioc-devel] RangedData objects deprecated

2019-12-04 Thread Vincent Carey
The RangedData objects are still viable with the software you are using, but trying to set colnames will trigger an error. In Bioc 3.11 you won't even be able to use the RangedData class at all. So an intervention is needed now. The RangedData objects that were serialized or created in your

[Bioc-devel] RangedData objects deprecated

2019-12-04 Thread Brent O'Carrigan
Dear Bioc devel team, Can you advise how to amend the following code to update references to RangedData objects? I’m running the Broad ichorCNA, which had a similar issue described in the package internal code, which I gather has been addressed