Good day,

It's formatted in monospace font, implying that it's R code, but

new('SnpSet', phenoData = [AnnotatedDataFrame], experimentData = [MIAME], 
annotation = [character], protocolData = [AnnotatedDataFrame], call = [matrix], 
callProbability = [matrix], ...)

is just pseudocode. Also, object creation using new is discouraged. Perhaps 
SnpSet could have a proper constructor, like ExpressionSet does?

--------------------------------------
Dario Strbenac
University of Sydney
Camperdown NSW 2050
Australia

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