Re: [Bioc-devel] TabixFileList() constructor broken in devel

2017-01-05 Thread Robert Castelo
half of Robert Castelo <robert.cast...@upf.edu> *Sent:* Wednesday, December 28, 2016 11:50:58 AM *To:* bioc-devel@r-project.org *Subject:* [Bioc-devel] TabixFileList() constructor broken in devel hi, the 'TabixFileList()' constructor in Rsamtools seems to be broken in devel: library(Rsamtools) ex

Re: [Bioc-devel] TabixFileList() constructor broken in devel

2017-01-04 Thread Martin Morgan
of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Robert Castelo <robert.cast...@upf.edu> *Sent:* Wednesday, December 28, 2016

Re: [Bioc-devel] TabixFileList() constructor broken in devel

2016-12-29 Thread Robert Castelo
tistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of > Robert Castelo <robert.cast...@upf.edu> &

Re: [Bioc-devel] TabixFileList() constructor broken in devel

2016-12-28 Thread Shepherd, Lori
ject.org Subject: [Bioc-devel] TabixFileList() constructor broken in devel hi, the 'TabixFileList()' constructor in Rsamtools seems to be broken in devel: library(Rsamtools) example(TabixFileList) ## which actually does not construct any 'TabixFileList' TabixFileList(tbx) Error in as.vector(x, &

[Bioc-devel] TabixFileList() constructor broken in devel

2016-12-28 Thread Robert Castelo
hi, the 'TabixFileList()' constructor in Rsamtools seems to be broken in devel: library(Rsamtools) example(TabixFileList) ## which actually does not construct any 'TabixFileList' TabixFileList(tbx) Error in as.vector(x, "character") : cannot coerce type 'environment' to vector of type