Re: [Bioc-devel] Time-out error on Ubuntu 20.04 build

2021-05-05 Thread Selles Vidal, Lara
> > Thanks a lot in advance, > > Best wishes, > > Lara > > > > Lara Selles > lara.selle...@imperial.ac.uk > > > > > > > > > De: Mike Smith > Enviado: jueves, 15 de octubre de 2020 1:04 > Para: Pages, Her

Re: [Bioc-devel] Time-out error on Ubuntu 20.04 build

2021-05-03 Thread Hervé Pagès
tried to reproduce the error on an Ubuntu 20.04, and could not manage to do so. I am unsure what to do at this stage in order to trouble shoot the problem. Does anybody have any suggestions about to go around this? Thanks a lot in advance, Best wishes, Lara Lara Selles lara.selle...@

Re: [Bioc-devel] Time-out error on Ubuntu 20.04 build

2021-05-03 Thread Selles Vidal, Lara
...@imperial.ac.uk De: Mike Smith Enviado: jueves, 15 de octubre de 2020 1:04 Para: Pages, Herve Cc: Selles Vidal, Lara ; bioc-devel@r-project.org Asunto: Re: [Bioc-devel] Time-out error on Ubuntu 20.04 build I think this information will probably just

Re: [Bioc-devel] Time-out error on Ubuntu 20.04 build

2020-10-14 Thread Mike Smith
I think this information will probably just confuse the issue, but I've successfully checked out ncRNAtools and run R CMD build / check without issue on my Ubuntu 20.04 test machine. It took a couple of minutes. Rolling back to an older version prior to the SSL patch would lead to failure and the

Re: [Bioc-devel] Time-out error on Ubuntu 20.04 build

2020-10-13 Thread Pages, Herve
On 10/13/20 15:18, Selles Vidal, Lara wrote: > Hi Hervé, > > Thanks a lot for your reply and clarification. It is reassuring to know > that Ubuntu 18.04 is still the primary Linux target! > > I am not running Ubuntu 20.04 on a Docker image, but I am running it on > a virtual machine

Re: [Bioc-devel] Time-out error on Ubuntu 20.04 build

2020-10-13 Thread Selles Vidal, Lara
Hi Hervé, Thanks a lot for your reply and clarification. It is reassuring to know that Ubuntu 18.04 is still the primary Linux target! I am not running Ubuntu 20.04 on a Docker image, but I am running it on a virtual machine (VirtualBox) on RedHat 7. Do you think this could be a similar case

Re: [Bioc-devel] Time-out error on Ubuntu 20.04 build

2020-10-13 Thread Pages, Herve
Hi Lara, Thanks for trying hard to address this problem. I can reproduce the error by running 'R CMD build ncRNAtools' interactively on nebbiolo1. Yes it seems that the timeout is related to the SSL issue on Ubuntu 20.04. Are you running Ubuntu 20.04 on a Docker image? I've read somewhere

Re: [Bioc-devel] Time-out error on Ubuntu 20.04 build

2020-10-13 Thread Selles Vidal, Lara
Dear all, I have been seeing the same problem on all builds of ncRNAtools for a week now. I have run the exact same R CMD build command (R CMD build --keep-empty-dirs --no-resave-data) on an Ubuntu 20.04 environment, using the environment settings described here

[Bioc-devel] Time-out error on Ubuntu 20.04 build

2020-10-06 Thread Selles Vidal, Lara
Dear all, I have recently pushed some changes to my ncRNAtools package to fix an error caused by a bug in the most recent version of OpenSSL which made requests to https addresses fail with default security settings. The changes have fixed all errors in my local Ubuntu 20.04 environment, and