Re: [Bioc-devel] Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1

2015-11-18 Thread Ludwig Geistlinger
; you'll definitely want the head of svn >> trunk rather than a snapshot. >> >> Martin >> ________ >> From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Ludwig >> Geistlinger [ludwig.geistlin...@bio.ifi.lmu.de] >&g

[Bioc-devel] Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1

2015-11-18 Thread Ludwig Geistlinger
Hi, I am experiencing troubles installing "Hmisc", especially its dependency "acepack", via > biocLite("acepack") in R-devel installed from the "R-devel-mavericks-signed.pkg" downloaded from https://r.research.att.com/. The error reads: BioC_mirror: https://bioconductor.org Using

Re: [Bioc-devel] Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1

2015-11-18 Thread Ludwig Geistlinger
y Brian Ripley) it seems like >> it should be possible to use gfortran-5.2 via editing the >> R_HOME/etc/Makeconf or ~/.R/Makevars. >> >> Martin >> >> >> >> From: Bioc-devel [bioc-devel-boun...@r-project.org] on b

Re: [Bioc-devel] Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1

2015-11-18 Thread Morgan, Martin
Geistlinger [ludwig.geistlin...@bio.ifi.lmu.de] Sent: Wednesday, November 18, 2015 8:46 AM To: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1 While I am following Jo's suggestions on installing gcc via homebrew on my mac laptop

Re: [Bioc-devel] Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1

2015-11-18 Thread Henrik Bengtsson
finitive answer will be the R-SIG-Mac mailing list > >> > >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > >> > >> perhaps specifically this thread > >> > >> https://stat.ethz.ch/pipermail/r-sig-mac/2015-October/011641.html > >> >

Re: [Bioc-devel] Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1

2015-11-18 Thread Rainer Johannes
IG-Mac mailing list >>> >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>> >>> perhaps specifically this thread >>> >>> https://stat.ethz.ch/pipermail/r-sig-mac/2015-October/011641.html >>> >>> which points to the R-admin