rk 14263
From: Enio Gjerga
Sent: Monday, March 30, 2020 9:13 AM
To: Turaga, Nitesh
Cc: Shepherd, Lori ; Hervé Pagès
Subject: Re: [Bioc-devel] Trying to access the source repository of a
bioconductor package (Developer Access)
Hello,
Yes thank you. I am very ne
your changes including a version bump
> > git commit -a # commit your changes and give an informative message
> > git push
> > git push upstream master
> >
> >
> > Lori Shepherd
> > Bioconductor Core Team
> > Roswell Park Comprehensive Cancer Cen
tive message
> git push
> git push upstream master
>
>
> Lori Shepherd
> Bioconductor Core Team
> Roswell Park Comprehensive Cancer Center
> Department of Biostatistics & Bioinformatics
> Elm & Carlton Streets
> Buffalo, New York 14263
> From: Bioc-devel
& Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Enio Gjerga
Sent: Monday, March 30, 2020 8:34 AM
To: Shepherd, Lori
Cc: Turaga, Nitesh ; Hervé Pagès
Subject: Re: [Bioc-devel] Trying to access the source repository of a
bioconductor
gt;
> Buffalo, New York 14263
> --
> *From:* Bioc-devel on behalf of Enio
> Gjerga
> *Sent:* Monday, March 30, 2020 6:05 AM
> *To:* Turaga, Nitesh
> *Cc:* Hervé Pagès
> *Subject:* Re: [Bioc-devel] Trying to access the source repository of a
>
tics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on behalf of Enio Gjerga
Sent: Monday, March 30, 2020 6:05 AM
To: Turaga, Nitesh
Cc: Hervé Pagès
Subject: Re: [Bioc-devel] Trying to access the source repository of a
bioconductor
Hi,
Thank you very much. After following your suggestion I went to set up the
SSH and I was also able to clone the packages I was maintaining locally.
Next I did my desired changes to the cloned package locally and I wanted to
push these changes to the Bioconductor repositories. For that I used
You should try and set up your system using SSH from your Github account as
well.
> On Mar 27, 2020, at 12:25 PM, Enio Gjerga wrote:
>
> Hi,
>
> Ahh apparently I cannot. I tried to clone a random repo (PHONEMeS) locally
> through the command you provided, and then got the following:
>
>
Ok, can you also show my the result of
ssh - T g...@git.bioconductor.org | grep CNORfeeder
> On Mar 27, 2020, at 11:54 AM, Enio Gjerga wrote:
>
> Hi,
>
> Thank you for your reply. So according to #14:
>
> 1. I use "git remote -v" and then I get the following:
>
> origin
Hi,
Thank you for your reply. So according to #14:
1. I use "git remote -v" and then I get the following:
origin https://github.com/saezlab/CNOv2.git (fetch)
origin https://github.com/saezlab/CNOv2.git (push)
upstream g...@git.bioconductor.org:packages/CNORfeeder.git (fetch)
upstream
As given in #14 of the FAQ, please send me
git remote -v
> On Mar 27, 2020, at 10:54 AM, Enio Gjerga wrote:
>
> Hello,
>
> Thank you very much for your reply. I have added a new key on my
> BiocCredentials and on Github, however, I am afraid that the same issue still
> persists.
Hello,
Thank you very much for your reply. I have added a new key on my
BiocCredentials and on Github, however, I am afraid that the same issue
still persists. If I try to check whether I have access to the package
(using the "ssh -T g...@git.bioconductor.org" command) or clone it locally
Try adding another key. If that doesn't work, show us your git set up.
http://bioconductor.org/developers/how-to/git/faq/
#13 and #14
Best,
Nitesh
On 3/27/20, 6:15 AM, "Bioc-devel on behalf of Enio Gjerga"
wrote:
Hello,
I am Enio Gjerga and I am the maintainer of the
Hello,
I am Enio Gjerga and I am the maintainer of the CNORfeeder and the CNORode
package, a role which I got recently. I am facing trouble trying to access
the source packages for then later syncing it with a Github repository and
do a few necessary updates. I try first to obtain developer
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