Re: [Bioc-devel] Update of data packages in RTCGA Family/Factory of R Packages

Thanks a lot! So I'll contact you after mid-May :) [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

Re: [Bioc-devel] Update of data packages in RTCGA Family/Factory of R Packages

Hi Marcin, I can help you add these to ExperimentHub after the release. There are a few other things I need to tidy so timing will be about mid-May. Note that the new data format should not be data.frames but instead follow what we discussed here: https://tracker.bioconductor.org/issue1335

Re: [Bioc-devel] Update of data packages in RTCGA Family/Factory of R Packages

I have read from vignette that 2 Adding resources Resources are contributed to ExperimentHub in the form of a package. The package contains the resource metadata, man pages, vignette and any supporting R functions the author wants to provide. This is a similar design to the existing Bioconductor

Re: [Bioc-devel] Update of data packages in RTCGA Family/Factory of R Packages

2016-04-16 22:55 GMT+02:00 Martin Morgan : > > > On 04/16/2016 01:09 PM, Marcin Kosiński wrote: > >> Hello, >> >> I would like to ask you all for an advice in the following issue. >> >> Last year I have started working with data from The Cancer Genome Atlas. >>

Re: [Bioc-devel] Update of data packages in RTCGA Family/Factory of R Packages

On 04/16/2016 01:09 PM, Marcin Kosiński wrote: Hello, I would like to ask you all for an advice in the following issue. Last year I have started working with data from The Cancer Genome Atlas. During that work out team (https://github.com/orgs/RTCGA/people) have prepared some tools for

[Bioc-devel] Update of data packages in RTCGA Family/Factory of R Packages

Hello, I would like to ask you all for an advice in the following issue. Last year I have started working with data from The Cancer Genome Atlas. During that work out team (https://github.com/orgs/RTCGA/people) have prepared some tools for downloading and integrating datasets from TCGA study and