Re: [Bioc-devel] Vignette for xcms fails to build on tokay1

2017-08-15 Thread Neumann, Steffen
Indeed, is magically fixed today. Thanks for the clarification. Yours, Steffen On Fri, 2017-08-11 at 11:38 -0400, Martin Morgan wrote: > On 08/10/2017 04:14 PM, Neumann, Steffen wrote: > > Hi BioC, > > > > since that build error we have updated xcms to 2.99.6, > > and have started to convert

Re: [Bioc-devel] Vignette for xcms fails to build on tokay1

2017-08-11 Thread Martin Morgan
On 08/10/2017 04:14 PM, Neumann, Steffen wrote: Hi BioC, since that build error we have updated xcms to 2.99.6, and have started to convert the xcmsDirect vignette to Rmd. Now, we have the same kind of build error on the xcmsMsn vignette,

Re: [Bioc-devel] Vignette for xcms fails to build on tokay1

2017-08-10 Thread Neumann, Steffen
Hi BioC, since that build error we have updated xcms to 2.99.6, and have started to convert the xcmsDirect vignette to Rmd. Now, we have the same kind of build error on the xcmsMsn vignette, http://bioconductor.org/checkResults/devel/bioc-LATEST/xcms/tokay1-buildsrc.html I think that just

Re: [Bioc-devel] Vignette for xcms fails to build on tokay1

2017-07-30 Thread Neumann, Steffen
Hi,  Hi, any suggestions or better diagnostics that could help us fixing this, in case it really is something in xcms ? There were a few earlier reports with similar messages, back in 2013, slightly hinting at virus scanners: 

[Bioc-devel] Vignette for xcms fails to build on tokay1

2017-07-27 Thread Rainer Johannes
Dear all, one of the xcms vignettes fails to build on tokay1 recently with the error message: Warning: running command '"C:\PROGRA˜1\MIKTEX˜1.9\miktex\bin\x64\texify.exe" --quiet --pdf "xcmsDirect.tex" --max-iterations=20 -I "C:/Users/biocbuild/bbs-3.6-bioc/R/share/texmf/tex/latex" -I