Good day, When importing a VCF file from VariantAnnotation's data directory into R, a warning is emitted.
library(VariantAnnotation) aFile <- system.file("extdata", "hapmap_exome_chr22.vcf.gz", package = "VariantAnnotation") aSet <- readVcf(aFile, "hg19") Warning message: In .bcfHeaderAsSimpleList(header) : duplicate keys in header will be forced to unique rownames Is there some problem with one of the VCF file's format which is distributed with VariantAnnotation ? I wouldn't expect any package data files to emit warnings to the end user. R version 3.3.1 (2016-06-21) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 15.10 VariantAnnotation 1.18.7 -------------------------------------- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel