On 12/16/2013 02:34 PM, Ryan C. Thompson wrote:
Indeed, loading rJava and calling .jinit() also triggers the bug. I have updated
my script (same URL as before) to demonstrate this. I run the bad code before
and after calling .jinit(), and it only crashes the second time.
The following simplifie
Indeed, loading rJava and calling .jinit() also triggers the bug. I
have updated my script (same URL as before) to demonstrate this. I run
the bad code before and after calling .jinit(), and it only crashes the
second time.
On Mon 16 Dec 2013 02:30:34 PM PST, Simon Urbanek wrote:
On Dec 16, 2
By the way, here is my sessionInfo after a successful run of the bug
script (without loading xlsxjars):
sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8LC_COLLATE=en_US.UT
On Mon Dec 16 14:18:41 2013, Steve Lianoglou wrote:
On Mon, Dec 16, 2013 at 2:03 PM, Ryan wrote:
I'm quite sure that it is an interaction between something that xlsxjars
does and edgeR's C code. The example I gave is a reduction from my actual
script, and I finally figured out that loading t
Hi,
On Mon, Dec 16, 2013 at 2:03 PM, Ryan wrote:
> I'm quite sure that it is an interaction between something that xlsxjars
> does and edgeR's C code. The example I gave is a reduction from my actual
> script, and I finally figured out that loading the xlsxjars package is what
> triggers the cras
2013 11:02 AM, Dan Tenenbaum wrote:
- Original Message -
From: "Steve Lianoglou"
To: "Ryan C. Thompson"
Cc: bioc-devel@r-project.org
Sent: Monday, December 16, 2013 10:57:44 AM
Subject: Re: [Bioc-devel] edgeR crashes when xlsxjars is loaded
Hi Ryan,
I ran this code
at
/home/mtmorgan/src/R-devel/src/main/dotcode.c:1809
... (R evaluator)
On 12/16/2013 11:02 AM, Dan Tenenbaum wrote:
- Original Message -
From: "Steve Lianoglou"
To: "Ryan C. Thompson"
Cc: bioc-devel@r-project.org
Sent: Monday, December 16, 2013 10:57:44 AM
Subject
- Original Message -
> From: "Steve Lianoglou"
> To: "Ryan C. Thompson"
> Cc: bioc-devel@r-project.org
> Sent: Monday, December 16, 2013 10:57:44 AM
> Subject: Re: [Bioc-devel] edgeR crashes when xlsxjars is loaded
>
> Hi Ryan,
>
> I ra
Hi Ryan,
I ran this code w/ the data you sent, and my system does not crash in
either case ... perhaps you're barking up the wrong tree?
sessionInof is below,
-steve
sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-apple-darwin10.8.0 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/
Hello,
I have found an issue where having the xlsxjars package loaded kills the
entire R session with a segfault when "edgeR::estimateDisp" is called on
my dataset. The issue seems to be specific to my data, since a random
integer matrix of identical dimension does not trigger the bug. Other
10 matches
Mail list logo
