Re: [Bioc-devel] failing Bioconductor package DeepBlueR

Dear Hervé, You are right. I found the issue in rtracklayer and made a pull request with a fix. https://github.com/lawremi/rtracklayer/pull/1 Thanks for your help. Best, Markus On Tue, 12 Sep 2017 at 18:01 Hervé Pagès wrote: > Hi Markus, > > The class cache issue is

Re: [Bioc-devel] failing Bioconductor package DeepBlueR

Hi Markus, The class cache issue is just a warning here and is distracting. What seems to break deepblue_liftover() is a recent change to rtracklayer::import.chain. Looks like commit a3c4308d928290700c6326eabda8dea4a96146e3 from Sep 4 might be the culprit. Cheers, H. On 09/12/2017 06:29 AM,

Re: [Bioc-devel] failing Bioconductor package DeepBlueR

Dear all, Our DeepBlueR package is currently not passing R CMD check in devel because of a class cache issue: http://bioconductor.org/checkResults/devel/bioc-LATEST/DeepBlueR/tokay1-checksrc.html Found more than one class "file" in cache; using the first, from namespace 'BiocGenerics' Also

Re: [Bioc-devel] failing Bioconductor package DeepBlueR

Hi Nitesh, Thanks for looking into it. Unfortunately, I still can't access the repository since I was using a DSA key which was previously mentioned here as not supported. I thus generated an RSA key and added it to github. Will newly added github keys be automatically imported? If not could you

Re: [Bioc-devel] failing Bioconductor package DeepBlueR

Hi Markus, Your SSH key has been accepted, but you don’t have access to the repository because the SVN system did not know you have access rights to this package. I’ll give you access rights to that package. Best Nitesh > On Sep 8, 2017, at 7:34 AM, Shepherd, Lori