}for (a in names(args)) assign(a,
> >> args[[a]], pos
> >> >>> = envir, inherits = FALSE) r <-
> tryCatch(eval(xpr,
> >> envir
> >> >>> = envir), error = function(e) e)if (obj$verbose) {
> >>
NULL})i <- i + 1}}, error = function(e) {if
>> >>> (!identical(conditionMessage(e), "StopIteration"))
>> >>> stop(simpleError(conditionMessage(e), expr))})
>> >>> 22: e$fun(obj, substitute(ex), parent.frame(
= iwNorm,
> >>> iwNormFun = iwNormFun, ilim = ilim))
> >>> 24: purityA(msmsPths)
> >>> 25: eval(expr, envir, enclos)
> >>> 26: eval(ei, envir)
> >>> 27: withVisible(eval(ei, envir))
> >>> 28: source("msPurity-vign
abort (with core dump, if enabled)
>>> 2: normal R exit
>>> 3: exit R without saving workspace
>>> 4: exit R saving workspace
>>> Selection:
>>>
>>> > sessionInfo()
>>> R version 3.3.1 (2016-06-21)
>>> Platform: x86_64-apple-d
attached packages:
>> [1] xcms_1.49.6 Biobase_2.33.3 ProtGenerics_1.5.1
>> [4] BiocGenerics_0.19.2 mzR_2.7.4 msPurity_0.99.6
>> [7] Rcpp_0.12.7
>>
>> loaded via a namespace (and not attached):
>> [1] sapa_2.0-2 magrittr_1.5
d_3.3.1 snow_0.4-1
> [16] iterators_1.0.8 survival_2.39-5multtest_2.29.0
> [19] doSNOW_1.0.14 Matrix_1.2-7.1 RColorBrewer_1.1-2
> [22] reshape2_1.4.1 S4Vectors_0.11.16 codetools_0.2-14
> [25] MassSpecWavelet_1.39.0 stringi_1.1.1
RANN_2.5
----- Original Message -
> From: "Thomas Lawson" <thomas.nigel.law...@gmail.com>
> To: "Martin Morgan" <martin.mor...@roswellpark.org>
> Cc: "bioc-devel" <Bioc-devel@r-project.org>
> Sent: Wednesday, September 21, 20
Thanks for reply. Some of those errors are a bit cryptic for me also.
I have not heard of the valgrind functionality before in R. I will test a
few things out with valgrind and hopefully I can pinpoint the error a bit
more.
Thanks again.
Tom
On Wed, Sep 21, 2016 at 12:50 PM, Martin Morgan <
On 09/20/2016 05:18 AM, Thomas Lawson wrote:
Hi BioConductor community,
My package (msPurity) is passing the build on the Linux (*zin1*) and
Windows servers (*moscato1*) but failing on the Mac OS X server (*morelia*).
Also I cannot seem to replicate the failure either on a local installation
of
