Re: [Bioc-devel] proper way to define an S4 method for 'plot'
FYI - I can reproduce this on linux with R Under development (unstable)
(2020-03-19 r78011)
From: Bioc-devel on behalf of Vincent Carey
Sent: 16 March 2020 23:52
To: bioc-devel
Subject: [Bioc-devel] proper way to define an S4 method for 'plot'
I just updated my R and I am getting into trouble with MLInterfaces
maintenance.
> BiocManager::install("MLInterfaces")
*Bioconductor version 3.11 (BiocManager 1.30.10), R Under development
(unstable)*
* (2020-03-15 r77975)*
*Installing package(s) 'MLInterfaces'*
*Warning: unable to access index for repository
https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.rstudio.com%2Fbin%2Fmacosx%2Fel-capitan%2Fcontrib%2F4.0data=02%7C01%7Claurent.gatto%40uclouvain.be%7C2b8e5941ab5042bd146308d7c9fcc42d%7C7ab090d4fa2e4ecfbc7c4127b4d582ec%7C0%7C0%7C637199959771328615sdata=7Pq9i9bWYWJ3AaK%2FnGWpAZuvOa0RFGoXLg3cY6XY660%3Dreserved=0
:*
* cannot open URL
'https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.rstudio.com%2Fbin%2Fmacosx%2Fel-capitan%2Fcontrib%2F4.0%2FPACKAGESdata=02%7C01%7Claurent.gatto%40uclouvain.be%7C2b8e5941ab5042bd146308d7c9fcc42d%7C7ab090d4fa2e4ecfbc7c4127b4d582ec%7C0%7C0%7C637199959771328615sdata=BWqDMETTVk7AEYIj1gpfTYDzjsHADvqmqfD6RloDaK4%3Dreserved=0
'*
There is a binary version available but the source version is later:
binary source needs_compilation
MLInterfaces 1.67.2 1.67.5 FALSE
*installing the source package ‘MLInterfaces’*
*trying URL
'https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.11%2Fbioc%2Fsrc%2Fcontrib%2FMLInterfaces_1.67.5.tar.gzdata=02%7C01%7Claurent.gatto%40uclouvain.be%7C2b8e5941ab5042bd146308d7c9fcc42d%7C7ab090d4fa2e4ecfbc7c4127b4d582ec%7C0%7C0%7C637199959771328615sdata=yWBq%2BjSD4xvRKkWUKkjoFXuG074hlVcsLSPRiPc5YAc%3Dreserved=0
'*
*Content type 'application/x-gzip' length 1071876 bytes (1.0 MB)*
*==*
*downloaded 1.0 MB*
* installing *source* package ‘MLInterfaces’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in getGeneric(f, TRUE, envir, package) :
no generic function found for ‘plot’
Calls: ... namespaceImportFrom -> .mergeImportMethods ->
-> getGeneric
recover called non-interactively; frames dumped, use debugger() to view
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘MLInterfaces’ in getGeneric(f,
TRUE, envir, package):
no generic function found for ‘plot’
...
> sessionInfo()
R Under development (unstable) (2020-03-15 r77975)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.6
Matrix products: default
BLAS:
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.0.dylib
LAPACK:
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rmarkdown_2.1
loaded via a namespace (and not attached):
[1] BiocManager_1.30.10 compiler_4.0.0 startup_0.14.0
[4] tools_4.0.0 htmltools_0.4.0 Rcpp_1.0.3
[7] codetools_0.2-16knitr_1.28 xfun_0.12
[10] digest_0.6.25 rlang_0.4.5 evaluate_0.14
--
The information in this e-mail is intended only for the ...{{dropped:10}}
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Re: [Bioc-devel] proper way to define an S4 method for 'plot'
Not sure if its worth mentioning but I saw this type of ERROR when we first
started the release in R 4.0.0 when S3 plot functions were not defined in the
NAMESPACE.
http://bioconductor.org/developers/how-to/troubleshoot-build-report/#s3method
But it could also be from plot() generic moving from graphics to base
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on behalf of Martin Morgan
Sent: Tuesday, March 17, 2020 1:33 AM
To: Michael Lawrence ; Henrik Bengtsson
Cc: bioc-devel
Subject: Re: [Bioc-devel] proper way to define an S4 method for 'plot'
We'll discuss this and other issues at the developer forum on Thursday (12pm US
Eastern) https://stat.ethz.ch/pipermail/bioc-devel/2020-March/016347.html.
The builds are a really big mess at the moment
http://bioconductor.org/checkResults/3.11/bioc-LATEST/, with many changes in
R-devel causing often easy-to-fix changes. We need developers to step forward
and fix their packages.
A variant of the plot generic change I saw while troubleshooting the graph
package was due to a stale version of Rgraphviz, installed before the move of
the generic. It was resolved by re-installing Rgraphviz, but then I see
> requireNamespace("Rgraphviz")
Loading required namespace: Rgraphviz
Warning message:
multiple methods tables found for ‘plot’
which I am still working to resolve. I'll bump Rgraphviz version number to
force re-installation when I'm sure I've got everything figured out.
Martin
On 3/16/20, 7:37 PM, "Bioc-devel on behalf of Michael Lawrence via Bioc-devel"
wrote:
At least with 2020-03-16 r77987 (Mac OS) I wasn't able to reproduce this.
Btw, there's no real need for an S4 method in this case. An S3 method would
work just as well.
On Mon, Mar 16, 2020 at 4:12 PM Henrik Bengtsson
wrote:
> Maybe it's related to:
>
> * The plot() S3 generic function is now in package base rather than
> package graphics, as it is reasonable to have methods that do not use
> the graphics package. The generic is currently re-exported from the
> graphics namespace to allow packages importing it from there to
> continue working, but this may change in future.
>
> mentioned in the R 4.0.0 NEWS
> (https://cran.r-project.org/doc/manuals/r-devel/NEWS.html)?
>
> /Henrik
>
> On Mon, Mar 16, 2020 at 3:52 PM Vincent Carey
> wrote:
> >
> > I just updated my R and I am getting into trouble with MLInterfaces
> > maintenance.
> >
> > > BiocManager::install("MLInterfaces")
> >
> > *Bioconductor version 3.11 (BiocManager 1.30.10), R Under development
> > (unstable)*
> >
> > * (2020-03-15 r77975)*
> >
> > *Installing package(s) 'MLInterfaces'*
> >
> > *Warning: unable to access index for repository
> > https://cran.rstudio.com/bin/macosx/el-capitan/contrib/4.0
> > :*
> >
> > * cannot open URL
> > 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/4.0/PACKAGES
> > '*
> >
> >
> > There is a binary version available but the source version is later:
> >
> > binary source needs_compilation
> >
> > MLInterfaces 1.67.2 1.67.5 FALSE
> >
> >
> > *installing the source package ‘MLInterfaces’*
> >
> >
> > *trying URL
> > '
>
https://bioconductor.org/packages/3.11/bioc/src/contrib/MLInterfaces_1.67.5.tar.gz
> > <
>
https://bioconductor.org/packages/3.11/bioc/src/contrib/MLInterfaces_1.67.5.tar.gz
> >'*
> >
> > *Content type 'application/x-gzip' length 1071876 bytes (1.0 MB)*
> >
> > *==*
> >
> > *downloaded 1.0 MB*
> >
> >
> > * installing *source* package ‘MLInterfaces’ ...
> >
> > ** using staged installation
> >
> > ** R
> >
> > ** inst
> >
> > ** byte-compile and prepare package for lazy loading
> >
> > Error in getGeneric(f, TRUE, envir, package) :
> >
> > no generic function found for ‘plot’
> >
> > Calls: ... namespaceImportFrom -> .mergeImportMethods ->
> > -> getGeneric
> >
> > recover called non-interactively; frames dumped, use debugger() to view
> >
> > ** help
> >
> > *** installing help indices
> >
> > ** building package indices
> >
> > ** installing vignettes
> >
> > ** testing if installed package can be loaded from temporary location
> >
> > Error: package or namespace load failed for ‘MLInterfaces’ in
> getGeneric(f,
> > TRUE, envir, package):
> >
> > no generic function found for ‘plot’
Re: [Bioc-devel] proper way to define an S4 method for 'plot'
We'll discuss this and other issues at the developer forum on Thursday (12pm US
Eastern) https://stat.ethz.ch/pipermail/bioc-devel/2020-March/016347.html.
The builds are a really big mess at the moment
http://bioconductor.org/checkResults/3.11/bioc-LATEST/, with many changes in
R-devel causing often easy-to-fix changes. We need developers to step forward
and fix their packages.
A variant of the plot generic change I saw while troubleshooting the graph
package was due to a stale version of Rgraphviz, installed before the move of
the generic. It was resolved by re-installing Rgraphviz, but then I see
> requireNamespace("Rgraphviz")
Loading required namespace: Rgraphviz
Warning message:
multiple methods tables found for ‘plot’
which I am still working to resolve. I'll bump Rgraphviz version number to
force re-installation when I'm sure I've got everything figured out.
Martin
On 3/16/20, 7:37 PM, "Bioc-devel on behalf of Michael Lawrence via Bioc-devel"
wrote:
At least with 2020-03-16 r77987 (Mac OS) I wasn't able to reproduce this.
Btw, there's no real need for an S4 method in this case. An S3 method would
work just as well.
On Mon, Mar 16, 2020 at 4:12 PM Henrik Bengtsson
wrote:
> Maybe it's related to:
>
> * The plot() S3 generic function is now in package base rather than
> package graphics, as it is reasonable to have methods that do not use
> the graphics package. The generic is currently re-exported from the
> graphics namespace to allow packages importing it from there to
> continue working, but this may change in future.
>
> mentioned in the R 4.0.0 NEWS
> (https://cran.r-project.org/doc/manuals/r-devel/NEWS.html)?
>
> /Henrik
>
> On Mon, Mar 16, 2020 at 3:52 PM Vincent Carey
> wrote:
> >
> > I just updated my R and I am getting into trouble with MLInterfaces
> > maintenance.
> >
> > > BiocManager::install("MLInterfaces")
> >
> > *Bioconductor version 3.11 (BiocManager 1.30.10), R Under development
> > (unstable)*
> >
> > * (2020-03-15 r77975)*
> >
> > *Installing package(s) 'MLInterfaces'*
> >
> > *Warning: unable to access index for repository
> > https://cran.rstudio.com/bin/macosx/el-capitan/contrib/4.0
> > :*
> >
> > * cannot open URL
> > 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/4.0/PACKAGES
> > '*
> >
> >
> > There is a binary version available but the source version is later:
> >
> > binary source needs_compilation
> >
> > MLInterfaces 1.67.2 1.67.5 FALSE
> >
> >
> > *installing the source package ‘MLInterfaces’*
> >
> >
> > *trying URL
> > '
>
https://bioconductor.org/packages/3.11/bioc/src/contrib/MLInterfaces_1.67.5.tar.gz
> > <
>
https://bioconductor.org/packages/3.11/bioc/src/contrib/MLInterfaces_1.67.5.tar.gz
> >'*
> >
> > *Content type 'application/x-gzip' length 1071876 bytes (1.0 MB)*
> >
> > *==*
> >
> > *downloaded 1.0 MB*
> >
> >
> > * installing *source* package ‘MLInterfaces’ ...
> >
> > ** using staged installation
> >
> > ** R
> >
> > ** inst
> >
> > ** byte-compile and prepare package for lazy loading
> >
> > Error in getGeneric(f, TRUE, envir, package) :
> >
> > no generic function found for ‘plot’
> >
> > Calls: ... namespaceImportFrom -> .mergeImportMethods ->
> > -> getGeneric
> >
> > recover called non-interactively; frames dumped, use debugger() to view
> >
> > ** help
> >
> > *** installing help indices
> >
> > ** building package indices
> >
> > ** installing vignettes
> >
> > ** testing if installed package can be loaded from temporary location
> >
> > Error: package or namespace load failed for ‘MLInterfaces’ in
> getGeneric(f,
> > TRUE, envir, package):
> >
> > no generic function found for ‘plot’
> >
> >
> > ...
> >
> >
> > > sessionInfo()
> >
> > R Under development (unstable) (2020-03-15 r77975)
> >
> > Platform: x86_64-apple-darwin15.6.0 (64-bit)
> >
> > Running under: macOS Mojave 10.14.6
> >
> >
> > Matrix products: default
> >
> > BLAS:
> >
>
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.0.dylib
> >
> > LAPACK:
> >
>
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
> >
> >
> > locale:
> >
> > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> >
> >
> > attached base packages:
> >
> > [1] stats graphics grDevices
Re: [Bioc-devel] proper way to define an S4 method for 'plot'
At least with 2020-03-16 r77987 (Mac OS) I wasn't able to reproduce this.
Btw, there's no real need for an S4 method in this case. An S3 method would
work just as well.
On Mon, Mar 16, 2020 at 4:12 PM Henrik Bengtsson
wrote:
> Maybe it's related to:
>
> * The plot() S3 generic function is now in package base rather than
> package graphics, as it is reasonable to have methods that do not use
> the graphics package. The generic is currently re-exported from the
> graphics namespace to allow packages importing it from there to
> continue working, but this may change in future.
>
> mentioned in the R 4.0.0 NEWS
> (https://cran.r-project.org/doc/manuals/r-devel/NEWS.html)?
>
> /Henrik
>
> On Mon, Mar 16, 2020 at 3:52 PM Vincent Carey
> wrote:
> >
> > I just updated my R and I am getting into trouble with MLInterfaces
> > maintenance.
> >
> > > BiocManager::install("MLInterfaces")
> >
> > *Bioconductor version 3.11 (BiocManager 1.30.10), R Under development
> > (unstable)*
> >
> > * (2020-03-15 r77975)*
> >
> > *Installing package(s) 'MLInterfaces'*
> >
> > *Warning: unable to access index for repository
> > https://cran.rstudio.com/bin/macosx/el-capitan/contrib/4.0
> > :*
> >
> > * cannot open URL
> > 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/4.0/PACKAGES
> > '*
> >
> >
> > There is a binary version available but the source version is later:
> >
> > binary source needs_compilation
> >
> > MLInterfaces 1.67.2 1.67.5 FALSE
> >
> >
> > *installing the source package ‘MLInterfaces’*
> >
> >
> > *trying URL
> > '
> https://bioconductor.org/packages/3.11/bioc/src/contrib/MLInterfaces_1.67.5.tar.gz
> > <
> https://bioconductor.org/packages/3.11/bioc/src/contrib/MLInterfaces_1.67.5.tar.gz
> >'*
> >
> > *Content type 'application/x-gzip' length 1071876 bytes (1.0 MB)*
> >
> > *==*
> >
> > *downloaded 1.0 MB*
> >
> >
> > * installing *source* package ‘MLInterfaces’ ...
> >
> > ** using staged installation
> >
> > ** R
> >
> > ** inst
> >
> > ** byte-compile and prepare package for lazy loading
> >
> > Error in getGeneric(f, TRUE, envir, package) :
> >
> > no generic function found for ‘plot’
> >
> > Calls: ... namespaceImportFrom -> .mergeImportMethods ->
> > -> getGeneric
> >
> > recover called non-interactively; frames dumped, use debugger() to view
> >
> > ** help
> >
> > *** installing help indices
> >
> > ** building package indices
> >
> > ** installing vignettes
> >
> > ** testing if installed package can be loaded from temporary location
> >
> > Error: package or namespace load failed for ‘MLInterfaces’ in
> getGeneric(f,
> > TRUE, envir, package):
> >
> > no generic function found for ‘plot’
> >
> >
> > ...
> >
> >
> > > sessionInfo()
> >
> > R Under development (unstable) (2020-03-15 r77975)
> >
> > Platform: x86_64-apple-darwin15.6.0 (64-bit)
> >
> > Running under: macOS Mojave 10.14.6
> >
> >
> > Matrix products: default
> >
> > BLAS:
> >
> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.0.dylib
> >
> > LAPACK:
> >
> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
> >
> >
> > locale:
> >
> > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> >
> >
> > attached base packages:
> >
> > [1] stats graphics grDevices utils datasets methods base
> >
> >
> > other attached packages:
> >
> > [1] rmarkdown_2.1
> >
> >
> > loaded via a namespace (and not attached):
> >
> > [1] BiocManager_1.30.10 compiler_4.0.0 startup_0.14.0
> >
> > [4] tools_4.0.0 htmltools_0.4.0 Rcpp_1.0.3
> >
> > [7] codetools_0.2-16knitr_1.28 xfun_0.12
> >
> > [10] digest_0.6.25 rlang_0.4.5 evaluate_0.14
> >
> > --
> > The information in this e-mail is intended only for th...{{dropped:6}}
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
--
Michael Lawrence
Senior Scientist, Bioinformatics and Computational Biology
Genentech, A Member of the Roche Group
Office +1 (650) 225-7760
micha...@gene.com
Join Genentech on LinkedIn | Twitter | Facebook | Instagram | YouTube
[[alternative HTML version deleted]]
___
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] proper way to define an S4 method for 'plot'
Maybe it's related to:
* The plot() S3 generic function is now in package base rather than
package graphics, as it is reasonable to have methods that do not use
the graphics package. The generic is currently re-exported from the
graphics namespace to allow packages importing it from there to
continue working, but this may change in future.
mentioned in the R 4.0.0 NEWS
(https://cran.r-project.org/doc/manuals/r-devel/NEWS.html)?
/Henrik
On Mon, Mar 16, 2020 at 3:52 PM Vincent Carey
wrote:
>
> I just updated my R and I am getting into trouble with MLInterfaces
> maintenance.
>
> > BiocManager::install("MLInterfaces")
>
> *Bioconductor version 3.11 (BiocManager 1.30.10), R Under development
> (unstable)*
>
> * (2020-03-15 r77975)*
>
> *Installing package(s) 'MLInterfaces'*
>
> *Warning: unable to access index for repository
> https://cran.rstudio.com/bin/macosx/el-capitan/contrib/4.0
> :*
>
> * cannot open URL
> 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/4.0/PACKAGES
> '*
>
>
> There is a binary version available but the source version is later:
>
> binary source needs_compilation
>
> MLInterfaces 1.67.2 1.67.5 FALSE
>
>
> *installing the source package ‘MLInterfaces’*
>
>
> *trying URL
> 'https://bioconductor.org/packages/3.11/bioc/src/contrib/MLInterfaces_1.67.5.tar.gz
> '*
>
> *Content type 'application/x-gzip' length 1071876 bytes (1.0 MB)*
>
> *==*
>
> *downloaded 1.0 MB*
>
>
> * installing *source* package ‘MLInterfaces’ ...
>
> ** using staged installation
>
> ** R
>
> ** inst
>
> ** byte-compile and prepare package for lazy loading
>
> Error in getGeneric(f, TRUE, envir, package) :
>
> no generic function found for ‘plot’
>
> Calls: ... namespaceImportFrom -> .mergeImportMethods ->
> -> getGeneric
>
> recover called non-interactively; frames dumped, use debugger() to view
>
> ** help
>
> *** installing help indices
>
> ** building package indices
>
> ** installing vignettes
>
> ** testing if installed package can be loaded from temporary location
>
> Error: package or namespace load failed for ‘MLInterfaces’ in getGeneric(f,
> TRUE, envir, package):
>
> no generic function found for ‘plot’
>
>
> ...
>
>
> > sessionInfo()
>
> R Under development (unstable) (2020-03-15 r77975)
>
> Platform: x86_64-apple-darwin15.6.0 (64-bit)
>
> Running under: macOS Mojave 10.14.6
>
>
> Matrix products: default
>
> BLAS:
> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.0.dylib
>
> LAPACK:
> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
>
>
> locale:
>
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
>
> attached base packages:
>
> [1] stats graphics grDevices utils datasets methods base
>
>
> other attached packages:
>
> [1] rmarkdown_2.1
>
>
> loaded via a namespace (and not attached):
>
> [1] BiocManager_1.30.10 compiler_4.0.0 startup_0.14.0
>
> [4] tools_4.0.0 htmltools_0.4.0 Rcpp_1.0.3
>
> [7] codetools_0.2-16knitr_1.28 xfun_0.12
>
> [10] digest_0.6.25 rlang_0.4.5 evaluate_0.14
>
> --
> The information in this e-mail is intended only for th...{{dropped:6}}
___
Bioc-devel@r-project.org mailing list
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[Bioc-devel] proper way to define an S4 method for 'plot'
I just updated my R and I am getting into trouble with MLInterfaces
maintenance.
> BiocManager::install("MLInterfaces")
*Bioconductor version 3.11 (BiocManager 1.30.10), R Under development
(unstable)*
* (2020-03-15 r77975)*
*Installing package(s) 'MLInterfaces'*
*Warning: unable to access index for repository
https://cran.rstudio.com/bin/macosx/el-capitan/contrib/4.0
:*
* cannot open URL
'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/4.0/PACKAGES
'*
There is a binary version available but the source version is later:
binary source needs_compilation
MLInterfaces 1.67.2 1.67.5 FALSE
*installing the source package ‘MLInterfaces’*
*trying URL
'https://bioconductor.org/packages/3.11/bioc/src/contrib/MLInterfaces_1.67.5.tar.gz
'*
*Content type 'application/x-gzip' length 1071876 bytes (1.0 MB)*
*==*
*downloaded 1.0 MB*
* installing *source* package ‘MLInterfaces’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in getGeneric(f, TRUE, envir, package) :
no generic function found for ‘plot’
Calls: ... namespaceImportFrom -> .mergeImportMethods ->
-> getGeneric
recover called non-interactively; frames dumped, use debugger() to view
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘MLInterfaces’ in getGeneric(f,
TRUE, envir, package):
no generic function found for ‘plot’
...
> sessionInfo()
R Under development (unstable) (2020-03-15 r77975)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.6
Matrix products: default
BLAS:
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.0.dylib
LAPACK:
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rmarkdown_2.1
loaded via a namespace (and not attached):
[1] BiocManager_1.30.10 compiler_4.0.0 startup_0.14.0
[4] tools_4.0.0 htmltools_0.4.0 Rcpp_1.0.3
[7] codetools_0.2-16knitr_1.28 xfun_0.12
[10] digest_0.6.25 rlang_0.4.5 evaluate_0.14
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