Yes, when a new version appears on CRAN it is automatically picked up by the
build machines.
Valerie
On 05/14/2018 05:04 AM, Kevin Horan wrote:
Valerie,
Sorry, I think my memory of what the actual problem was was wrong. I have
spoken to the rsvg author and he has now fixed the build of
Valerie,
��� Sorry, I think my memory of what the actual problem was was wrong.
I have spoken to the rsvg author and he has now fixed the build of rsvg
in CRAN for OS X. So will that then just get automatically put on your
machines, or else, would it now be possible to manually put it on?
Kevin,
I feel like we're not on the same page. We've had this discussion and both
Herve and I tried to explain the situation:
https://stat.ethz.ch/pipermail/bioc-devel/2018-February/012812.html
We do not build CRAN packages from source on the Windows and Mac build
machines. If a CRAN binary
Now that this past bioc release is done, and R 3.5 is stable, would
it be possible to install the "rsvg" package on your build machines? Thanks.
Kevin
On 02/19/2018 02:01 PM, Alexey Sergushichev wrote:
> Valerie, thanks. Will try to ask there.
>
> However, after looking through the
Ok, I understand. Is it safe to assume that the rsvg package would be
available by the time the next bioconductor release occurs? In that case
I can just plan to re-enable that function at release time. Otherwise I
will have to find another workaround for it. Thanks.
Kevin
On 02/13/2018
Valerie, thanks. Will try to ask there.
However, after looking through the mailing list it looks like R-devel
builds for OS X aren't trivial and aren't part of CRAN...
--
Alexey
On Mon, Feb 19, 2018 at 9:05 PM, Obenchain, Valerie <
valerie.obench...@roswellpark.org> wrote:
> Hi,
>
> There has
Hi,
There has been some discussion of the devel Mac binaries on the R-SIG-Mac
mailing list. That list would be the best place to ask this question.
https://stat.ethz.ch/pipermail/r-sig-mac/2018-January/thread.html
Valerie
On 02/19/2018 08:32 AM, Alexey Sergushichev wrote:
Valerie,
Are there
Valerie,
Are there any estimates on how often CRAN OS X builds happen? There are
still no builds for rsvg and other packages...
Thanks,
Alexey
On Wed, Feb 7, 2018 at 8:09 PM, Obenchain, Valerie <
valerie.obench...@roswellpark.org> wrote:
> Hi Kevin,
>
> CRAN binaries for El Capitan in devel
Hi Kevin,
As Val said, some CRAN packages with native code won't compile
on our Windows or Mac builders because of missing components,
and rsvg is one of them. Please keep in mind that we already
install many external components required for the compilation
of Bioconductor packages. The process
Valerie,
Ok, I understand the difference now. Would it be possible to
install the system requirement for rsvg ( just on devel)?
I'm trying to generate plots in either PNG or SVG with OpenBabel.
For PNG, OpenBabel requires it's own Cario library be installed on the
system (doesn't
Hi,
By default, the build system installs CRAN dependencies on the Mac and Windows
builders with 'type=both':
install.packages("mypackage", type="both")
This means it first tries to install the binary and if that fails, it tries to
install from source. Packages without native code or
Valerie,
I'm not sure I understand. I looked at another package that is
currently installed on the mac devel machine, DiagrammeR
(https://cran.r-project.org/package=DiagrammeR), and it has the same set
of links on the CRAN site as rsvg does. In particular, it does not show
a r-devel
Hi Kevin,
CRAN binaries for El Capitan in devel aren't available. You can see this on the
rsvg landing page:
https://cran.r-project.org/web/packages/rsvg/index.html
Nothing we can do until CRAN makes them available.
Valerie
On 02/07/2018 08:29 AM, Kevin Horan wrote:
The ChemmineR build is
The ChemmineR build is failing on the mac due to a new dependency not
being available, the package "rsvg". Would it be possible to install
that on the mac build machine? Thanks.
http://bioconductor.org/checkResults/devel/bioc-LATEST/ChemmineR/merida2-install.html
Kevin
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