Re: [Bioc-devel] seqlevelsStyle- doesn't work for GRanges object

Hi Tengfei, Should be fixed in GenomicRanges 1.15.45 On 04/10/2014 03:29 PM, Tengfei Yin wrote: forget to say thank you in the end :) You're welcome :) H. On Thu, Apr 10, 2014 at 6:22 PM, Tengfei Yin tengfei@sbgenomics.comwrote: Hi all, seqlevelsStyle- method does work for me in

Re: [Bioc-devel] seqlevelsStyle- doesn't work for GRanges object

Thanks a lot, it works! cheers Tengfei On Fri, Apr 11, 2014 at 5:37 AM, Hervé Pagès hpa...@fhcrc.org wrote: Hi Tengfei, Should be fixed in GenomicRanges 1.15.45 On 04/10/2014 03:29 PM, Tengfei Yin wrote: forget to say thank you in the end :) You're welcome :) H. On Thu, Apr

[Bioc-devel] seqlevelsStyle- doesn't work for GRanges object

Hi all, seqlevelsStyle- method does work for me in devel-branch, I haven't dig into it yet, please check out the code below and its output. ## for you to paste library(GenomicRanges) gr - GRanges(chr1, IRanges(1, 3)) seqlevelsStyle(gr) ## works seqlevelsStyle(gr) - NCBI ## fail seqnameStyle(gr)

Re: [Bioc-devel] seqlevelsStyle- doesn't work for GRanges object

forget to say thank you in the end :) On Thu, Apr 10, 2014 at 6:22 PM, Tengfei Yin tengfei@sbgenomics.comwrote: Hi all, seqlevelsStyle- method does work for me in devel-branch, I haven't dig into it yet, please check out the code below and its output. ## for you to paste