Re: [Bioc-devel] strange error in Jenkins build for singleCellWorkflow

The latest build of simpleSingleCell (Build #48: Jun 20, 2017 5:37:13 AM) is failing because GenomicFeatures can't be loaded. GenomicFeatures broke because of the new versions of DBI and RSQLite released over the past week. Herve and I are working on fixing up GenomicFeatures and once that's done

Re: [Bioc-devel] strange error in Jenkins build for singleCellWorkflow

Hi all, I had this same issue a few months ago (in the weeks leading up to the release of R-3.4.0), when building an Rmarkdown website on my own laptop. It seemed the session variables were cleaned up between markdown documents, but that packages remained loaded and accumulated to the point that

Re: [Bioc-devel] strange error in Jenkins build for singleCellWorkflow

Thanks for the report Aaron. I'll take a look. Valerie On 06/20/2017 07:10 AM, Aaron Lun wrote: > Hi all, > > > I'm getting a curious error in the Jenkins log when I try to build the > singleCellWorkflow: > > > http://docbuilder.bioconductor.org:8080/job/simpleSingleCell/48/label=master/console

Re: [Bioc-devel] strange error in Jenkins build for singleCellWorkflow

Hi Aaron, you may try to manually run a garbage collection on the DLLs gcDLLs() ?gcDLLs Federico On 20 June 2017 at 15:09, Aaron Lun wrote: > Hi all, > > > I'm getting a curious error in the Jenkins log when I try to build the > singleCellWorkflow: > > >

Re: [Bioc-devel] strange error in Jenkins build for singleCellWorkflow

Hi all, I'm getting a curious error in the Jenkins log when I try to build the singleCellWorkflow: http://docbuilder.bioconductor.org:8080/job/simpleSingleCell/48/label=master/console The key part is at the bottom: Error: package or namespace load failed for 'GenomicFeatures' in