Re: [Bioc-devel] vectorize default dist2 function in genefilter

2013-03-14 Thread Wolfgang Huber
Hi James I added your suggestion to the package, it is in svn revision 74349 and should be on the server in the devel section soon. This an old package - I noted the first commit to it had revision number 24 and was by Robert Gentleman on 2001-08-01. Best wishes Wolfgang El

Re: [Bioc-devel] vectorize default dist2 function in genefilter

2013-03-13 Thread James F. Reid
Hi Wolfgang, On 12/03/13 21:11, Wolfgang Huber wrote: Dear James Thank you. What would the saved time be (e.g. compared to the overall runtime of arrayQualityMetrics)? I would be surprised if the saving was worth the added complexity, but am always happy to be surprised. I believe so but

Re: [Bioc-devel] vectorize default dist2 function in genefilter

2013-03-13 Thread James F. Reid
Hi Wolfgang, On 12/03/13 21:11, Wolfgang Huber wrote: Dear James Thank you. What would the saved time be (e.g. compared to the overall runtime of arrayQualityMetrics)? I would be surprised if the saving was worth the added complexity, but am always happy to be surprised. I believe so but

Re: [Bioc-devel] vectorize default dist2 function in genefilter

2013-03-12 Thread Wolfgang Huber
Dear James Thank you. What would the saved time be (e.g. compared to the overall runtime of arrayQualityMetrics)? I would be surprised if the saving was worth the added complexity, but am always happy to be surprised. A patch of the .R and .Rd file would be most welcome and expedite the