[Bioc-devel] Handling of classVersion

2016-10-11 Thread Laurent Gatto
Dear all, Kasper gave this recent advice not to call new() in the prototype (or at least that was how it was interpreted) You (and everyone else) should not construct new instances by using new() together with prototype. This could be handled by setting the version in the initialize method

Re: [Bioc-devel] Automatic build failure notifications

2016-10-11 Thread Hervé Pagès
OK, will do. Thanks Emma for your feedback. H. On 10/10/2016 11:22 PM, Schymanski, Emma wrote: Hi Herve, Markus, all, It would really be great if these automatic notifications would be on again – and if this would happen for devel and release. After my last email Dan T. suggested I sign up

Re: [Bioc-devel] Automatic build failure notifications

2016-10-11 Thread Dan Tenenbaum
- Original Message - > From: "Hervé Pagès" > To: "Emma Schymanski" , "bioc-devel" > > Cc: "Dan Tenenbaum" > Sent: Tuesday, October 11, 2016 10:55:20 AM > Subject: Re: Automatic build failure notifications > OK, will do. Thanks Emma for your feedback. > I like the idea of opting in

Re: [Bioc-devel] flowCore fails with GCC 4.4.7 on RHEL 6.0

2016-10-11 Thread Mike
It does use some c++11 code and I think it is reasonable to expect relative newer gcc (>=4.8.4) to be installed. On 10/10/2016 05:42 PM, Kasper Daniel Hansen wrote: Latest version (1.39.11). My guess is that this is a case of the author using C++ stuff which is not support on 4.4.7. ** lib

Re: [Bioc-devel] flowCore fails with GCC 4.4.7 on RHEL 6.0

2016-10-11 Thread Kasper Daniel Hansen
Two things. 1. You might be surprised how many HPC facilities uses older versions of GCC for stability. We do, and many others I know of. 2. In my opinion, you should have a configure script check for newer versions of GCC or document it elsewhere. I don't see that. Best, Kasper On Tue, Oct 11,

Re: [Bioc-devel] flowCore fails with GCC 4.4.7 on RHEL 6.0

2016-10-11 Thread Dan Tenenbaum
- Original Message - > From: "Kasper Daniel Hansen" > To: "Mike" > Cc: "bioc-devel" > Sent: Tuesday, October 11, 2016 5:57:02 PM > Subject: Re: [Bioc-devel] flowCore fails with GCC 4.4.7 on RHEL 6.0 > Two things. > > 1. You might be surprised how many HPC facilities uses older versio

Re: [Bioc-devel] flowCore fails with GCC 4.4.7 on RHEL 6.0

2016-10-11 Thread Kasper Daniel Hansen
I am happy to see it now lists C++11 under SystemRequirements. On Tue, Oct 11, 2016 at 9:05 PM, Dan Tenenbaum wrote: > > > - Original Message - > > From: "Kasper Daniel Hansen" > > To: "Mike" > > Cc: "bioc-devel" > > Sent: Tuesday, October 11, 2016 5:57:02 PM > > Subject: Re: [Bioc-de

Re: [Bioc-devel] flowCore fails with GCC 4.4.7 on RHEL 6.0

2016-10-11 Thread Henrik Bengtsson
On Tue, Oct 11, 2016 at 6:05 PM, Dan Tenenbaum wrote: > > > - Original Message - >> From: "Kasper Daniel Hansen" >> To: "Mike" >> Cc: "bioc-devel" >> Sent: Tuesday, October 11, 2016 5:57:02 PM >> Subject: Re: [Bioc-devel] flowCore fails with GCC 4.4.7 on RHEL 6.0 > >> Two things. >> >>