Re: [Bioc-devel] EXTERNAL: Re: name of git repo for brgedata/BRGEdata package

It seems you have submitted a bad id and key to the form. 1. For GitHub ID, it needs to submit as `carleshf`, not `github.com/carleshf`. 2. the SSH key needs the `ssh-rsa` header in front of the key. It was submitted without it. Please resubmit. Lori Shepherd Bioconductor Core Team

Re: [Bioc-devel] Modeling (statistic, p-value) pairs in MultiAssayExperiment

Thank you! Fig 1 shows the pipeline for a single database of pathways, but we used 10 different databases (GO, KEGG, Reactome...). Currently we use all of MSigDB, which includes 24 subcategories, and we have a matrix of ES and a matrix of pvalues for each. You always have the same drugs over

Re: [Bioc-devel] EXTERNAL: Permission denied (publickey) while pushing changes to Github

Hi Your key should have access now. Please try again. Best, Nitesh > On Oct 24, 2017, at 7:01 AM, Sokratis Kariotis > wrote: > > Hey all, I am trying to push som changes to my newly accepted packages > (pcxn,pcxnData) and get this: > > ''Permission denied

Re: [Bioc-devel] "extra" unit tests

A partial answer if you are using the 'testthat' framework: you can use `testthat::skip_on_bioc()` to specify that a test should be skipped if it is running on the BioC build machines. The test will otherwise be run (e.g., during local development). There are some other `testthat::skip*()`

Re: [Bioc-devel] "extra" unit tests

Thanks Pete! Didn't know about those. On Oct 24, 2017 11:17 PM, "Peter Hickey" wrote: > A partial answer if you are using the 'testthat' framework: you can use > `testthat::skip_on_bioc()` to specify that a test should be skipped if it > is running on the BioC build