I'm having some issues getting my package LOLA to pass R CMD check using
the updated dev versions of GenomicRanges et al.
It seems like any time I try to apply something across a
"CompressedGRangesList" object, it's giving errors when I use mclapply
from parallel. Here's a reproducible
Hi Nathan,
I can't reproduce this with the latest versions of S4Vectors (0.17.31),
IRanges (2.13.25), and GenomicRanges (1.31.19). Note that these versions
will only become available via biocLite() tomorrow but you can get them
directly from git.bioconductor.org.
With these versions, as.list,
According to my `sessionInfo` (see below), those are the versions I had
been using:
other attached packages:
[1] GenomicRanges_1.31.19 GenomeInfoDb_1.15.5 IRanges_2.13.25
[4] S4Vectors_0.17.31 BiocGenerics_0.25.3
And I had pulled them from biocLite...what's going on?
-Nathan
On
Hi Herve,
Never mind, I see now I am still a day old, looks like I was looking at
your sessionInfo paste and thought it was mine, whoops. I'll give it
another try tomorrow with the new versions.
other attached packages:
[1] GenomicRanges_1.31.18 GenomeInfoDb_1.15.5 IRanges_2.13.24
[4]
