Re: [Bioc-devel] No Mac builds Aug 29

2018-08-31 Thread Obenchain, Valerie
We've been having problems with the release Mac builder (merida2) after the migration. It may be in and (mostly) out of the build report until we can resolve this. Valerie On 08/29/2018 09:06 AM, Obenchain, Valerie wrote: The migration is done. The Macs should be back in the build report tomorr

[Bioc-devel] Git failing to push upstream to Bioc devel

2018-08-31 Thread Koen Van den Berge
Dear All, I have updated the vignette from the stageR package. I successfully committed the edit to my Github repo, and also wanted to push it to Bioc devel. However, Git is rejecting my push, while my working tree seems to be clean. Forcing the push with `git push -f` does not solve the issue. I

Re: [Bioc-devel] Git failing to push upstream to Bioc devel

2018-08-31 Thread Koen Van den Berge
Hi, I did git pull, using `git pull upstream master`, first (see output); is this insufficient? Best, Koen > On 31 Aug 2018, at 17:00, Turaga, Nitesh > wrote: > > Hi, > > You cannot force push to git.bioconductor.org. > > Please "git pull" before you do anything else. > > > Best > >

Re: [Bioc-devel] Git failing to push upstream to Bioc devel

2018-08-31 Thread Turaga, Nitesh
Hi, You cannot force push to git.bioconductor.org. Please "git pull" before you do anything else. Best Nitesh Get Outlook for Android From: Koen Van den Berge Sent: Friday, August 31, 8:01 PM Subject: [Bioc-devel] Git failing to push upstream to Bioc devel To: bi

[Bioc-devel] BiocManager updates / changes

2018-08-31 Thread Marcel Ramos
Dear bioc-devs, Thank you to all maintainers who have made appropriate changes to their packages *in devel*. This is an ongoing effort to replace any outdated BiocInstaller, biocLite, etc. code from packages as we transition to `BiocManager` before the next release. You may have noticed a recent