Re: [Bioc-devel] Memory usage for bplapply

2019-01-05 Thread Lulu Chen
Hi Martin, Thanks for your explanation which make me understand BiocParallel much better. I compare memory usage in my code before packaged (using doSNOW) and after packaged (using BiocParallel) and find the increased memory is caused by the attached packages, especially 'SummarizedExperiment'.

Re: [Bioc-devel] Memory usage for bplapply

2019-01-05 Thread Martin Morgan
In one R session I did library(SummarizedExperiment) and then saved search(). In another R session I loaded the packages on the search path in reverse order, recording pryr::mem_used() after each. I ended up with mem_used methods 25870312 datasets