Re: [Bioc-devel] Bug fix issue package MACSquantifyR

2020-01-15 Thread Turaga, Nitesh
Just as a follow up to the mailing list. This issue has been resolved from the Bioconductor end. The commit's were reset to during the release time, and the branches are clean and as expected. Raphael, please sync your branches on Github to the ones on Bioconductor before making changes and pu

[Bioc-devel] DeMixT issue

2020-01-15 Thread py11
Hi Bioconductor team, I just pushed the latest version from 1.3.1 to 1.3.2 into devel branch; however, there is no changes on the DeMixT website in biocondoctor, https://bioconductor.org/packages/devel/bioc/html/DeMixT.html Can you help me update it or is there anything I can do? Thanks, P

Re: [Bioc-devel] DeMixT issue

2020-01-15 Thread Turaga, Nitesh
Hi Peng, I was looking through your version bumps, and it looks a little off-track I have to say. The version bumps you should have in your repository should be following the order(from the commit below) should be 1.3.0 --> 1.3.1 --> 1.3.2 and so on. commit c358f5e7d8564423fb60abea7024b0106804

[Bioc-devel] Bioconductor Image deprecation 2 day notice for bioc_docker and bioconductor_full

2020-01-15 Thread Turaga, Nitesh
Dear Bioconductor developers, ​ This is the 2 day notice before the formal deprecation of the images listed below in favor of the latest ​ "bioconductor/bioconductor_docker" image. My previous email for anyone who might have missed the update​ about the direction the Bioconductor team is taking f

Re: [Bioc-devel] DeMixT issue

2020-01-15 Thread py11
Hi Nitesh, Thank you very much for detailed explanation. Since there is a major change in our package, we decided to bump version from 1.3.1 to 1.5.0 under devel branch. I did push repository from local machine into bioconductor from 1.3.1 --> 1.4.0 and the second try was from 1.3.1 --> 1