Re: [Bioc-devel] Bioconductor package DegNorm

2020-09-02 Thread Jiping Wang
Hi Lori, I hope I have fixed all bugs. I have pushed all changed to github. Thanks for help. Best, jiping From: "Shepherd, Lori" Date: Wednesday, September 2, 2020 at 9:40 AM To: jiping/wang User Subject: Bioconductor package DegNorm Hello Package Maintainer, The Bioconductor Team would

[Bioc-devel] glitches with releaseName() and seqlevelsStyle()

2020-09-02 Thread Robert Castelo
hi, i've found the following glitches with 'releaseName()' and 'seqlevelsStyle()', i guess due to recent changes in BSgenome and GenomeInfoDb, which is why i'm cc'ing Hervé ;) ===BioC release 3.11 everything OK= library(BSgenome.Hsapiens.UCSC.hg19)

Re: [Bioc-devel] glitches with releaseName() and seqlevelsStyle()

2020-09-02 Thread Pages, Herve
Hi Robert, On 9/2/20 11:12, Robert Castelo wrote: > hi, > > i've found the following glitches with 'releaseName()' and > 'seqlevelsStyle()', i guess due to recent changes in BSgenome and > GenomeInfoDb, which is why i'm cc'ing Hervé ;) > > ===BioC release 3.11 everything

Re: [Bioc-devel] Java version issue on Bioconductor test platform

2020-09-02 Thread Pages, Herve
Hi Arman, You already asked about this in May: https://stat.ethz.ch/pipermail/bioc-devel/2020-May/016788.html Have you followed up with the xlsx maintainers as suggested by Lluís? Cheers, H. On 8/29/20 11:12, Arman Shahrisa wrote: > Hi to all, > > I�m maintainer of the package �cbaf�. I have

Re: [Bioc-devel] BiocViews error during build on macOS

2020-09-02 Thread Shepherd, Lori
This looks like an intermittent ERROR that probably occurred at the unlucky time of when we would try to reinstall the package biocViews. I'll kick off a manual build of your package in review to see if it clears up. If it does not we will investigate further on our side and you can ignore

[Bioc-devel] Fwd: fetch upstream of an existing package

2020-09-02 Thread Turaga, Nitesh
Hi, Can you tell me which package you are talking about? Also, please take a look at the FAQ https://bioconductor.org/developers/how-to/git/faq/ and see if there are any points there which address your concern. Specifically take a look at number 13 and 14. If you have any follow-up