[Bioc-devel] Creating an org.Hs.uniprot.db package

Hey guys, I love the org.Hs.eg.db package (and similar others for other organisms). I work a lot with LCMSMS proteomics data, and I have always missed a similar org.Hs.uniprot.db package, so I am thinking of creating that (and then sharing it on BioC, to benefit fellow proteomics R users).

Re: [Bioc-devel] Creating an org.Hs.uniprot.db package

From: Rainer Johannes [johannes.rai...@eurac.edu] Sent: Wednesday, September 13, 2017 8:49 AM To: Aditya Bhagwat; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Creating an org.Hs.uniprot.db package Hi Aditya, you could check the more recent ensembldb EnsDb

Re: [Bioc-devel] Creating an org.Hs.uniprot.db package

:35 PM To: Vincent Carey Cc: Aditya Bhagwat; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Creating an org.Hs.uniprot.db package Hi, I general LCMSMS generate mass/charge data of Amino Acid or peptides. The goal in to identify which protein belong the peptides. The Software used with LCMSMS can

[Bioc-devel] Emails to package maintainer bouncing back - what to do?

Hey guys, Emails to package maintainer (as well as package author) are bouncing back. What should I do? (targetscan.Hs.eg.db package - wanted to ask them whether they plan an update to the latest version

[Bioc-devel] Fixing autonomics - ssh: connect to host git.bioconductor.org port 22: Connection timed out

, in my current setup things go through a proxyserver, could that be the reason? Thank you for feedback. Aditya -- Aditya Bhagwat Statistics ∙ Bioinformatics ∙ Data Science Translational Proteomics ∙ Philipps-University Marburg Karl-von-Frisch-Str 2 ∙ 35043 Marburg ∙ Germany Tel.: +49 6421 28

Re: [Bioc-devel] Fixing autonomics - ssh: connect to host git.bioconductor.org port 22: Connection timed out

ehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Aditya Bhagwat via Bioc-devel Sent: Wednesday, April 5, 2023 7:33 AM To: Sarvesh Nikumbh Cc: bioc-devel@r-proj

Re: [Bioc-devel] Fixing autonomics - ssh: connect to host git.bioconductor.org port 22: Connection timed out

on this blogpost: https://bioconductor.github.io/biocblog/posts/2023-03-01-transition-to-devel/ Sarvesh On Tue, 4 Apr 2023 at 19:38, Aditya Bhagwat via Bioc-devel < bioc-devel@r-project.org> wrote: Dear BioC team, I am having the same error as many others (the missing BiocStyle issue) and I

[Bioc-devel] autonomics devel : how to reproduce bioc build errors best ?

? Thankyou! Aditya -- Aditya Bhagwat Translational Proteomics ∙ Philipps-University Marburg Biological Pharmacological Center ∙ Room A406 Tel.: +49 6421 28 27403 -- Aditya Bhagwat Translational Proteomics ∙ Philipps-University Marburg Biological Pharmacological Center ∙ Room A406 Tel.: +49 6421 28

Re: [Bioc-devel] autonomics devel : how to reproduce bioc build errors best ?

ductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Aditya Bhagwat via Bioc-devel Sent: Wednesday, January 24, 2024 4:03 AM

[Bioc-devel] autonomics : nebbiolo (only) fails to locate weave

-- Aditya Bhagwat Translational Proteomics ∙ Philipps-University Marburg Biological Pharmacological Center ∙ Room A406 Tel.: +49 6421 28 27403 -- Aditya Bhagwat Translational Proteomics ∙ Philipps-University Marburg Biological Pharmacological Center ∙ Room A406 Tel.: +49 6421 28 27403