[Bioc-devel] Submitted package under review: linux/Mac builds fine, warning generated in windows

2021-02-01 Thread James Perkins
Hi all, I have a package under review, ExpHunterSuite. I understand that I must get the package running with no warnings or errors during the bioconductor builds before I can go to the next stage of the submission process. I have achieved this for the linux and Mac builds -

Re: [Bioc-devel] Submitted package under review: linux/Mac builds fine, warning generated in windows

2021-02-02 Thread James Perkins
I managed to fix the warning in Windows by renaming the function, please disregard my previous email. Jim On Mon, 1 Feb 2021 at 15:57, James Perkins wrote: > Hi all, > > I have a package under review, ExpHunterSuite. I understand that I must > get the package running with no warnin

Re: [Bioc-devel] Recently accepted package not appearing in nightly builds

2021-03-23 Thread James Perkins
Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *From:* Bioc-devel on behal

[Bioc-devel] Recently accepted package not appearing in nightly builds

2021-03-23 Thread James Perkins
Dear all, I am the maintainer of the package ExpHunterSuite. This was accepted thursday, and on Friday (19/03) the issue raised on the Bioconductor/contributions github page was closed (ExpHunterSuite #1835, https://github.com/Bioconductor/Contributions/issues/1835 ). The last message on the

Re: [Bioc-devel] devel builds are down

2021-03-24 Thread James Perkins
Thanks for the info Hervé, Has the workflow build been affected? There appears to have been no build since last Tuesday, I understand there *should* have been one last night: https://bioconductor.org/checkResults/3.13/workflows-LATEST/ Cheers, Jim On Wed, 24 Mar 2021 at 19:25, Hervé Pagès

Re: [Bioc-devel] devel builds are down

2021-03-28 Thread James Perkins
Great, thanks for letting me know Cheers Jim On Fri, 26 Mar 2021, 17:56 Hervé Pagès, wrote: > Hi Jim, > > Workflow builds are back (Linux only for now): > >https://bioconductor.org/checkResults/3.13/workflows-LATEST/ > > Cheers, > H. > > > On 3/24

Re: [Bioc-devel] Workflow package build all OK but no vignette and red Package propagation status LED

2023-11-17 Thread James Perkins
it be another factor? Jim On 2023-11-13 12:08, Martin Grigorov wrote: Hi, If you hover over the red LED you will see the following hint: NO, package depends on 'miRBaseConverter' which is not available" Regards, Martin On Mon, Nov 13, 2023 at 11:31 AM James Perkins wrote: Hi,

[Bioc-devel] Workflow package build all OK but no vignette and red Package propagation status LED

2023-11-13 Thread James Perkins
Hi, I am the maintainer of the Workflow package ExpHunterSuite. In the build report for the release branch, 3.18, my build and install status are green-OK. However, I have a red LED for Package Propagation. How can I tell what's gone wrong, and how could I fix it?