Re: [Bioc-devel] RMassBank build error

2016-10-09 Thread Stravs, Michael
Hi all, I now have all packages installed to test things and can reproduce the problem. I must confess that I don't have a deep understanding on how S4 initialization works, so solution attempts on my side are very trial-and-errory. I will have to look into the workings of these initialization

Re: [Bioc-devel] RMassBank build error

2016-10-10 Thread Stravs, Michael
objects including MSnbase spectra; is there much I will need to consider in the upgrade path when loading? Thanks and best wishes, -Michele > > -Original Message- > From: Laurent Gatto [mailto:lg...@cam.ac.uk] > Sent: Sonntag, 9. Oktober 2016 22:03 > To: Stravs, Mi

Re: [Bioc-devel] RMassBank (almost) builds ...

2016-10-13 Thread Stravs, Michael
Emma Sent: Donnerstag, 13. Oktober 2016 16:39 To: Stravs, Michael Subject: FW: [Bioc-devel] RMassBank (almost) builds ... Sent: Thursday, 13 October 2016 4:33 PM To: Rajarshi Guha mailto:rajarshi.g...@gmail.com>> Cc: Egon Willighagen mailto:egon.willigha...@gmail.com>>;

[Bioc-devel] Versioned (Biobase) "initialize" method

2016-01-07 Thread Stravs, Michael
Hi, The "initialize" method of the Versioned class in Biobase is defined in a way that breaks when inheriting classes want to define a copy constructor. Code to reproduce: library(Biobase) setClass("A", representation = representation(var1="integer"), prototype=prototype(var1=