Re: [Bioc-devel] cannot git (the package Pi)

2018-02-07 Thread Turaga, Nitesh 
We name our release branches in the manner `RELEASE_3_6`. There is no branch 
`1.6.0`. As a maintainer you can only push to `master` and `RELEASE_3_6`.

You need to do something like, 

git checkout RELEASE_3_6

## Fix the bugs

git commit 

git push origin RELEASE_3_6


Maintainers are not allowed to create random branches on the Bioconductor git 
repository like `1.6.0`. It’s a hook that is rejecting your push.

Best,

Nitesh 


> On Feb 7, 2018, at 5:58 AM, Hai Fang  wrote:
> 
> Hi Nitesh
> 
> Following the instructions at 
> http://bioconductor.org/developers/how-to/git/maintain-bioc-only/, I have 
> successfully made changes to the development version (1.7.0 in my case). 
> 
> However, following the instructions at 
> https://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/, 
> I am unable to make change to the release version (1.6.0 in my case)
> 
> $ git checkout 1.6.0
> Switched to branch '1.6.0'
> $ git push origin 1.6.0
> Counting objects: 3, done.
> Delta compression using up to 4 threads.
> Compressing objects: 100% (3/3), done.
> Writing objects: 100% (3/3), 332 bytes | 0 bytes/s, done.
> Total 3 (delta 2), reused 0 (delta 0)
> remote: FATAL: W refs/heads/1.6.0 packages/Pi h.fang DENIED by fallthru
> remote: error: hook declined to update refs/heads/1.6.0
> To g...@git.bioconductor.org:packages/Pi
>  ! [remote rejected] 1.6.0 -> 1.6.0 (hook declined)
> error: failed to push some refs to 'g...@git.bioconductor.org:packages/Pi'
> 
> The error message shows it is denied by fallthru. Any ideas?
> 
> Best wishes,
> Hai
> 
> 
>> On 5 Feb 2018, at 15:00, Turaga, Nitesh  
>> wrote:
>> 
>> Hi,
>> 
>> We have that key on file for you. But if you never got access using that 
>> key, it is possible because you submitted an “ssh-dss” key instead of an 
>> “ssh-rsa”. 
>> 
>> To solve this, please submit another key, with 
>> https://help.github.com/articles/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent/.
>>  The “-t rsa” tells keygen to create an RSA key instead of a DDS.
>> 
>> ssh-keygen -t rsa -b 4096 -C "your_em...@example.com"
>> 
>> It’s either that, or you are using the wrong private key which corresponds 
>> to that public key.
>> 
>> Best,
>> 
>> Nitesh 
>> 
>>> On Feb 2, 2018, at 11:58 AM, Hai Fang  wrote:
>>> 
>>> Dear Lori,
>>> I have an issue accessing my package called ‘Pi’.
>>> Following the instruction detailed at 
>>> http://bioconductor.org/developers/how-to/git/maintain-bioc-only/, I have 
>>> submit my SSH public key (shown in red):
>>> 
>>> $ cat ~/.ssh/id_dsa.pub
>>> ssh-dss 
>>> 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
>>>  
>>> hf...@eduroam-219-092.nomadic.bris.ac.uk
>>> 
>>> When clone it into my local machine (OS X EI Capitan version 10.11.6), it 
>>> said the permission denied (shown in pink).
>>> 
>>> $ git clone g...@git.bioconductor.org:packages/Pi
>>> Cloning into 'Pi'...
>>> Permission denied (publickey).
>>> fatal: Could not read from remote repository.
>>> 
>>> Please make sure you have the correct access rights
>>> and the repository exists.
>>> 
>>> I wonder whether my SSH was indeed added into the system or should I 
>>> regenerate the key or something else.
>>> 
>>> Many thanks,
>>> Hai
>>> 
>>> [[alternative HTML version deleted]]
>>> 
>>> ___
>>> Bioc-devel@r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> 
>> 
>> 
>> This email message may contain legally privileged and/or confidential 
>> information.  If you are not the intended recipient(s), or the employee or 
>> agent responsible for the delivery of this message to the intended 
>> recipient(s), you are hereby notified that any disclosure, copying, 
>> distribution, or use of this email message is prohibited.  If you have 
>> received this message in error, please notify the sender immediately by 
>> e-mail and delete this email message from your computer. Thank you.
> 
> 



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Re: [Bioc-devel] cannot git (the package Pi)

2018-02-07 Thread Hai Fang 
Hi Nitesh

Following the instructions at 
http://bioconductor.org/developers/how-to/git/maintain-bioc-only/, I have 
successfully made changes to the development version (1.7.0 in my case).

However, following the instructions at 
https://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/, I 
am unable to make change to the release version (1.6.0 in my case)

$ git checkout 1.6.0
Switched to branch '1.6.0'
$ git push origin 1.6.0
Counting objects: 3, done.
Delta compression using up to 4 threads.
Compressing objects: 100% (3/3), done.
Writing objects: 100% (3/3), 332 bytes | 0 bytes/s, done.
Total 3 (delta 2), reused 0 (delta 0)
remote: FATAL: W refs/heads/1.6.0 packages/Pi h.fang DENIED by fallthru
remote: error: hook declined to update refs/heads/1.6.0
To g...@git.bioconductor.org:packages/Pi
 ! [remote rejected] 1.6.0 -> 1.6.0 (hook declined)
error: failed to push some refs to 'g...@git.bioconductor.org:packages/Pi'

The error message shows it is denied by fallthru. Any ideas?

Best wishes,
Hai


On 5 Feb 2018, at 15:00, Turaga, Nitesh 
> wrote:

Hi,

We have that key on file for you. But if you never got access using that key, 
it is possible because you submitted an “ssh-dss” key instead of an “ssh-rsa”.

To solve this, please submit another key, with 
https://help.github.com/articles/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent/.
 The “-t rsa” tells keygen to create an RSA key instead of a DDS.

ssh-keygen -t rsa -b 4096 -C 
"your_em...@example.com"

It’s either that, or you are using the wrong private key which corresponds to 
that public key.

Best,

Nitesh

On Feb 2, 2018, at 11:58 AM, Hai Fang 
> wrote:

Dear Lori,
I have an issue accessing my package called ‘Pi’.
Following the instruction detailed at 
http://bioconductor.org/developers/how-to/git/maintain-bioc-only/, I have 
submit my SSH public key (shown in red):

$ cat ~/.ssh/id_dsa.pub
ssh-dss 
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
 
hf...@eduroam-219-092.nomadic.bris.ac.uk

When clone it into my local machine (OS X EI Capitan version 10.11.6), it said 
the permission denied (shown in pink).

$ git clone g...@git.bioconductor.org:packages/Pi
Cloning into 'Pi'...
Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

I wonder whether my SSH was indeed added into the system or should I regenerate 
the key or something else.

Many thanks,
Hai

[[alternative HTML version deleted]]

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Re: [Bioc-devel] cannot git (the package Pi)

2018-02-05 Thread Hai Fang 
Thank Nitesh. The new key regenerated and submitted. Best wishes, Hai

> On 5 Feb 2018, at 15:00, Turaga, Nitesh  wrote:
> 
> Hi,
> 
> We have that key on file for you. But if you never got access using that key, 
> it is possible because you submitted an “ssh-dss” key instead of an 
> “ssh-rsa”. 
> 
> To solve this, please submit another key, with 
> https://help.github.com/articles/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent/.
>  The “-t rsa” tells keygen to create an RSA key instead of a DDS.
> 
>   ssh-keygen -t rsa -b 4096 -C "your_em...@example.com"
> 
> It’s either that, or you are using the wrong private key which corresponds to 
> that public key.
> 
> Best,
> 
> Nitesh 
> 
>> On Feb 2, 2018, at 11:58 AM, Hai Fang  wrote:
>> 
>> Dear Lori,
>> I have an issue accessing my package called ‘Pi’.
>> Following the instruction detailed at 
>> http://bioconductor.org/developers/how-to/git/maintain-bioc-only/, I have 
>> submit my SSH public key (shown in red):
>> 
>> $ cat ~/.ssh/id_dsa.pub
>> ssh-dss 
>> 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
>>  
>> hf...@eduroam-219-092.nomadic.bris.ac.uk
>> 
>> When clone it into my local machine (OS X EI Capitan version 10.11.6), it 
>> said the permission denied (shown in pink).
>> 
>> $ git clone g...@git.bioconductor.org:packages/Pi
>> Cloning into 'Pi'...
>> Permission denied (publickey).
>> fatal: Could not read from remote repository.
>> 
>> Please make sure you have the correct access rights
>> and the repository exists.
>> 
>> I wonder whether my SSH was indeed added into the system or should I 
>> regenerate the key or something else.
>> 
>> Many thanks,
>> Hai
>> 
>>  [[alternative HTML version deleted]]
>> 
>> ___
>> Bioc-devel@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> 
> 
> 
> This email message may contain legally privileged and/or confidential 
> information.  If you are not the intended recipient(s), or the employee or 
> agent responsible for the delivery of this message to the intended 
> recipient(s), you are hereby notified that any disclosure, copying, 
> distribution, or use of this email message is prohibited.  If you have 
> received this message in error, please notify the sender immediately by 
> e-mail and delete this email message from your computer. Thank you.

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Re: [Bioc-devel] cannot git (the package Pi)

2018-02-05 Thread Turaga, Nitesh 
Hi,

We have that key on file for you. But if you never got access using that key, 
it is possible because you submitted an “ssh-dss” key instead of an “ssh-rsa”. 

To solve this, please submit another key, with 
https://help.github.com/articles/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent/.
 The “-t rsa” tells keygen to create an RSA key instead of a DDS.

ssh-keygen -t rsa -b 4096 -C "your_em...@example.com"

It’s either that, or you are using the wrong private key which corresponds to 
that public key.

Best,

Nitesh 

> On Feb 2, 2018, at 11:58 AM, Hai Fang  wrote:
> 
> Dear Lori,
> I have an issue accessing my package called ‘Pi’.
> Following the instruction detailed at 
> http://bioconductor.org/developers/how-to/git/maintain-bioc-only/, I have 
> submit my SSH public key (shown in red):
> 
> $ cat ~/.ssh/id_dsa.pub
> ssh-dss 
> 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
>  
> hf...@eduroam-219-092.nomadic.bris.ac.uk
> 
> When clone it into my local machine (OS X EI Capitan version 10.11.6), it 
> said the permission denied (shown in pink).
> 
> $ git clone g...@git.bioconductor.org:packages/Pi
> Cloning into 'Pi'...
> Permission denied (publickey).
> fatal: Could not read from remote repository.
> 
> Please make sure you have the correct access rights
> and the repository exists.
> 
> I wonder whether my SSH was indeed added into the system or should I 
> regenerate the key or something else.
> 
> Many thanks,
> Hai
> 
>   [[alternative HTML version deleted]]
> 
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel



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recipient(s), you are hereby notified that any disclosure, copying, 
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this message in error, please notify the sender immediately by e-mail and 
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[Bioc-devel] cannot git (the package Pi)

2018-02-02 Thread Hai Fang 
Dear Lori,
I have an issue accessing my package called ‘Pi’.
Following the instruction detailed at 
http://bioconductor.org/developers/how-to/git/maintain-bioc-only/, I have 
submit my SSH public key (shown in red):

$ cat ~/.ssh/id_dsa.pub
ssh-dss 
B3NzaC1kc3MAAACBAJ1mqc5oq6taXNH6yQv8gFEgrYel/stqOon38vsrcNxZChSBkC7CY9S7zVuZwTgGXFT+qrQMQyMKkHWcgXH/1m+ZHwddBNa7ONNmytsJjgoHPb/Ku0LKlVL1Khv7NDX7fPua+BcNHG4/b5ThmY7nX6w8df085vN8cdWD1lP8kWHNFQCddUtZrX/P3xr+faddgKdPeqRBHQAAAIEAgXdO9WFyaAwASMDHYrdd1NfInCX/1VFMQT/UsxGbIzH7kpyQ1PSKRPGRymKqkUHUM62j8uy3lxq3Hi5OIwTw63A1pRipMfiKf7sm7C6lBHuRTjiYpXXEfJao9XsBmeoYPxWgA5eq1pHbjEaU7Fqubp8A46dsjE7NnPoDKu79N5kAAACAXI+zPRu1266IVZBB2ZHq44Le2FrEgnW882xV8KisrNJV0p3MCXNQoaOIz2w+XQT9n9/J06IiSuxagKuvGcO51pS/L7+pWGxWxTQLHNFFw+ubNHsVR39IIWyUUDNluUds5hlMWYDhC8YnuCZ17H9OqQVwxGzkEj2u/sUsjYm3goE=
 
hf...@eduroam-219-092.nomadic.bris.ac.uk

When clone it into my local machine (OS X EI Capitan version 10.11.6), it said 
the permission denied (shown in pink).

$ git clone g...@git.bioconductor.org:packages/Pi
Cloning into 'Pi'...
Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

I wonder whether my SSH was indeed added into the system or should I regenerate 
the key or something else.

Many thanks,
Hai

[[alternative HTML version deleted]]

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