Re: [Bioc-devel] Update of miRBaseVersions.db annotation package
Thanks very much, I appreciate! On Mon, Apr 9, 2018 at 7:45 PM Van Twisk, Daniel < daniel.vantw...@roswellpark.org> wrote: > The package looks okay now. I've moved the package onto our devel builder > and it should propagate within a day or two. > -- > *From:* Stefan Haunsberger <stefan.haunsber...@gmail.com> > *Sent:* Saturday, April 7, 2018 9:36:02 AM > *To:* Van Twisk, Daniel > *Cc:* bioc-devel@r-project.org > *Subject:* Re: [Bioc-devel] Update of miRBaseVersions.db annotation > package > > Hi, > > thanks for your fast reply. I've fixed the issues and get no error > messages when running BiocCheck. > This is the updated version: > https://drive.google.com/open?id=1rJcs2W5fcfc0Cq74QHfNfk0mu2xJ5JJ9 > > Thanks and kind regards, > > Stefan > > On Fri, Apr 6, 2018 at 7:58 PM Van Twisk, Daniel < > daniel.vantw...@roswellpark.org> wrote: > > I'd be happy to update your annotation package. The package, however, > appears to have multiple warnings and errors occurring on check and > BiocCheck. There appear to be some documentation issues and a test failure > in check. For BiocCheck, just be sure the BiocViews you are using are from > one category, the other warning is fine. > > > Please email once these issues are addressed and I can propagate the > changes. > -- > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Stefan > Haunsberger <stefan.haunsber...@gmail.com> > *Sent:* Thursday, April 5, 2018 1:39:21 PM > *To:* bioc-devel@r-project.org > *Subject:* [Bioc-devel] Update of miRBaseVersions.db annotation package > > Hi everyone, > > I would like to update the miRBaseVersions.db annotation package in devel > version. > It now contains the most recent miRBase release version 22, from the 12th > of March 2018, for mature miRNAs as well as precursor miRNAs. > > It can be downloaded from the following google drive repository: > > https://drive.google.com/file/d/1J7CFiJut-0ODDePa7oO1IY7L4JycLyX7/view?usp=sharing > > The most recently developed version is also available on GitHub: > https://github.com/StefanHaunsberger/mirbaseversions.db > > Thanks, > > Stefan > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] Update of miRBaseVersions.db annotation package
The package looks okay now. I've moved the package onto our devel builder and it should propagate within a day or two. From: Stefan Haunsberger <stefan.haunsber...@gmail.com> Sent: Saturday, April 7, 2018 9:36:02 AM To: Van Twisk, Daniel Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Update of miRBaseVersions.db annotation package Hi, thanks for your fast reply. I've fixed the issues and get no error messages when running BiocCheck. This is the updated version: https://drive.google.com/open?id=1rJcs2W5fcfc0Cq74QHfNfk0mu2xJ5JJ9 Thanks and kind regards, Stefan On Fri, Apr 6, 2018 at 7:58 PM Van Twisk, Daniel <daniel.vantw...@roswellpark.org<mailto:daniel.vantw...@roswellpark.org>> wrote: I'd be happy to update your annotation package. The package, however, appears to have multiple warnings and errors occurring on check and BiocCheck. There appear to be some documentation issues and a test failure in check. For BiocCheck, just be sure the BiocViews you are using are from one category, the other warning is fine. Please email once these issues are addressed and I can propagate the changes. From: Bioc-devel <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org>> on behalf of Stefan Haunsberger <stefan.haunsber...@gmail.com<mailto:stefan.haunsber...@gmail.com>> Sent: Thursday, April 5, 2018 1:39:21 PM To: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> Subject: [Bioc-devel] Update of miRBaseVersions.db annotation package Hi everyone, I would like to update the miRBaseVersions.db annotation package in devel version. It now contains the most recent miRBase release version 22, from the 12th of March 2018, for mature miRNAs as well as precursor miRNAs. It can be downloaded from the following google drive repository: https://drive.google.com/file/d/1J7CFiJut-0ODDePa7oO1IY7L4JycLyX7/view?usp=sharing The most recently developed version is also available on GitHub: https://github.com/StefanHaunsberger/mirbaseversions.db Thanks, Stefan [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] Update of miRBaseVersions.db annotation package
Hi, thanks for your fast reply. I've fixed the issues and get no error messages when running BiocCheck. This is the updated version: https://drive.google.com/open?id=1rJcs2W5fcfc0Cq74QHfNfk0mu2xJ5JJ9 Thanks and kind regards, Stefan On Fri, Apr 6, 2018 at 7:58 PM Van Twisk, Daniel < daniel.vantw...@roswellpark.org> wrote: > I'd be happy to update your annotation package. The package, however, > appears to have multiple warnings and errors occurring on check and > BiocCheck. There appear to be some documentation issues and a test failure > in check. For BiocCheck, just be sure the BiocViews you are using are from > one category, the other warning is fine. > > > Please email once these issues are addressed and I can propagate the > changes. > -- > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Stefan > Haunsberger <stefan.haunsber...@gmail.com> > *Sent:* Thursday, April 5, 2018 1:39:21 PM > *To:* bioc-devel@r-project.org > *Subject:* [Bioc-devel] Update of miRBaseVersions.db annotation package > > Hi everyone, > > I would like to update the miRBaseVersions.db annotation package in devel > version. > It now contains the most recent miRBase release version 22, from the 12th > of March 2018, for mature miRNAs as well as precursor miRNAs. > > It can be downloaded from the following google drive repository: > > https://drive.google.com/file/d/1J7CFiJut-0ODDePa7oO1IY7L4JycLyX7/view?usp=sharing > > The most recently developed version is also available on GitHub: > https://github.com/StefanHaunsberger/mirbaseversions.db > > Thanks, > > Stefan > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] Update of miRBaseVersions.db annotation package
I'd be happy to update your annotation package. The package, however, appears to have multiple warnings and errors occurring on check and BiocCheck. There appear to be some documentation issues and a test failure in check. For BiocCheck, just be sure the BiocViews you are using are from one category, the other warning is fine. Please email once these issues are addressed and I can propagate the changes. From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Stefan Haunsberger <stefan.haunsber...@gmail.com> Sent: Thursday, April 5, 2018 1:39:21 PM To: bioc-devel@r-project.org Subject: [Bioc-devel] Update of miRBaseVersions.db annotation package Hi everyone, I would like to update the miRBaseVersions.db annotation package in devel version. It now contains the most recent miRBase release version 22, from the 12th of March 2018, for mature miRNAs as well as precursor miRNAs. It can be downloaded from the following google drive repository: https://drive.google.com/file/d/1J7CFiJut-0ODDePa7oO1IY7L4JycLyX7/view?usp=sharing The most recently developed version is also available on GitHub: https://github.com/StefanHaunsberger/mirbaseversions.db Thanks, Stefan [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] Update of miRBaseVersions.db annotation package
Hi everyone, I would like to update the miRBaseVersions.db annotation package in devel version. It now contains the most recent miRBase release version 22, from the 12th of March 2018, for mature miRNAs as well as precursor miRNAs. It can be downloaded from the following google drive repository: https://drive.google.com/file/d/1J7CFiJut-0ODDePa7oO1IY7L4JycLyX7/view?usp=sharing The most recently developed version is also available on GitHub: https://github.com/StefanHaunsberger/mirbaseversions.db Thanks, Stefan [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
