Re: [Bioc-devel] Version on GitHub mirror different than Bioconductor

[Martin Morgan]

On 10/15/2016 08:56 PM, Raymond Cavalcante wrote:

I noticed that v0.99.20 on the Bioc build servers have an error because of a 
missing file (inst/extdata/test_annotations_6_tx_gene_symbol.bed). Oddly, that 
file is present in rcavalcante/annotatr v0.99.20 (added in commit acc43cb), but 
didn't make it when migrated to Bioc for some reason.

There actually some other changes from the acc43cb commit that didn't migrate 
to Bioc. Sorry for the trouble, but what's the easiest way to fix this?



I'm not really sure what went wrong; your package was accepted at 
version 0.99.19 but the script that processes the packages to svn pulled 
down (most of!) 0.99.20.


The most straight-forward step is to update svn to get it back in sync, 
following the directions in the acceptance email / at


http://bioconductor.org/developers/how-to/source-control/

Bump the version to 0.99.21.

Martin


Thanks,
Raymond Cavalcante


On Oct 15, 2016, at 08:21, Martin Morgan  wrote:


On 10/15/2016 07:53 AM, Raymond Cavalcante wrote:
Hello,

My recently accepted package (thanks!) annotatr, has mismatching versions on the GitHub 
mirror (v0.99.20 https://github.com/Bioconductor-mirror/annotatr/blob/master/DESCRIPTION 
) and 
Bioconductor/devel (v0.99.19 
https://bioconductor.org/packages/devel/bioc/html/annotatr.html 
). I'm not sure what 
I could do from my end to help solve this, so I'm hoping someone can help me.



the svn commit (r122398, mirrored to git) that changed version to 0.99.20 was 
after the most recent nightly builds started

 http://bioconductor.org/checkResults/3.4/bioc-LATEST/

(note the  'Last Changed Revi: 122395) The version available via the web site 
will sync on next successful build, likely today late afternoon Eastern.

Martin



Thanks,
Raymond Cavalcante
   [[alternative HTML version deleted]]

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Re: [Bioc-devel] Version on GitHub mirror different than Bioconductor

[Raymond Cavalcante]

I noticed that v0.99.20 on the Bioc build servers have an error because of a 
missing file (inst/extdata/test_annotations_6_tx_gene_symbol.bed). Oddly, that 
file is present in rcavalcante/annotatr v0.99.20 (added in commit acc43cb), but 
didn't make it when migrated to Bioc for some reason.

There actually some other changes from the acc43cb commit that didn't migrate 
to Bioc. Sorry for the trouble, but what's the easiest way to fix this?

Thanks,
Raymond Cavalcante

> On Oct 15, 2016, at 08:21, Martin Morgan  
> wrote:
> 
>> On 10/15/2016 07:53 AM, Raymond Cavalcante wrote:
>> Hello,
>> 
>> My recently accepted package (thanks!) annotatr, has mismatching versions on 
>> the GitHub mirror (v0.99.20 
>> https://github.com/Bioconductor-mirror/annotatr/blob/master/DESCRIPTION 
>> ) 
>> and Bioconductor/devel (v0.99.19 
>> https://bioconductor.org/packages/devel/bioc/html/annotatr.html 
>> ). I'm not 
>> sure what I could do from my end to help solve this, so I'm hoping someone 
>> can help me.
>> 
> 
> the svn commit (r122398, mirrored to git) that changed version to 0.99.20 was 
> after the most recent nightly builds started
> 
>  http://bioconductor.org/checkResults/3.4/bioc-LATEST/
> 
> (note the  'Last Changed Revi: 122395) The version available via the web site 
> will sync on next successful build, likely today late afternoon Eastern.
> 
> Martin
> 
> 
>> Thanks,
>> Raymond Cavalcante
>>[[alternative HTML version deleted]]
>> 
>> ___
>> Bioc-devel@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> 
> 
> 
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> agent responsible for the delivery of this message to the intended 
> recipient(s), you are hereby notified that any disclosure, copying, 
> distribution, or use of this email message is prohibited.  If you have 
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> e-mail and delete this email message from your computer. Thank you.

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Re: [Bioc-devel] Version on GitHub mirror different than Bioconductor

[Martin Morgan]

On 10/15/2016 07:53 AM, Raymond Cavalcante wrote:

Hello,

My recently accepted package (thanks!) annotatr, has mismatching versions on the GitHub 
mirror (v0.99.20 https://github.com/Bioconductor-mirror/annotatr/blob/master/DESCRIPTION 
) and 
Bioconductor/devel (v0.99.19 
https://bioconductor.org/packages/devel/bioc/html/annotatr.html 
). I'm not sure what 
I could do from my end to help solve this, so I'm hoping someone can help me.



the svn commit (r122398, mirrored to git) that changed version to 
0.99.20 was after the most recent nightly builds started


  http://bioconductor.org/checkResults/3.4/bioc-LATEST/

(note the  'Last Changed Revi: 122395) The version available via the web 
site will sync on next successful build, likely today late afternoon 
Eastern.


Martin



Thanks,
Raymond Cavalcante
[[alternative HTML version deleted]]

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