Re: [Bioc-devel] improving navigation within workflows

2017-08-06 Thread Martin Morgan
On 08/04/2017 05:00 PM, Andrzej Oleś wrote: Hi Vince, thanks for your feedback. The floating TOC would be technically possible, the question is more about the aesthetics of such solution. As we thought of using the right column for the supplementary stuff such as figure/table captions or footnot

Re: [Bioc-devel] improving navigation within workflows

2017-08-04 Thread Aaron Lun
Regarding the metadata: I think that the installation instructions should always be visible. However, the rest of the details could be stored in a hidden section that can be clicked to expose the full details (e.g., expands upon clicking a link saying "Click here for more details"). Andrzej Oleś w

Re: [Bioc-devel] improving navigation within workflows

2017-08-04 Thread Andrzej Oleś
Hi Vince, thanks for your feedback. The floating TOC would be technically possible, the question is more about the aesthetics of such solution. As we thought of using the right column for the supplementary stuff such as figure/table captions or footnotes, this space cannot harbor a floating TOC as

Re: [Bioc-devel] improving navigation within workflows

2017-08-04 Thread Vincent Carey
interesting. is the floating toc not an option for this? also, IMHO the "about this document" should go at the end. one wants the content to hit the reader right away, not the provenance, i think. On Fri, Aug 4, 2017 at 9:33 AM, Aaron Lun wrote: > Mind -> blown. Yes, that's exactly what I wan

Re: [Bioc-devel] improving navigation within workflows

2017-08-04 Thread Aaron Lun
Mind -> blown. Yes, that's exactly what I wanted, thanks. -Aaron On 04/08/17 14:19, Andrzej Oleś wrote: > Hi Aaron, > > I'm happy to inform that I've implemented your suggestion to add > navigation links at workflow pages. Feel free to have a look at the > working prototype under > https://ww

Re: [Bioc-devel] improving navigation within workflows

2017-08-04 Thread Andrzej Oleś
Hi Aaron, I'm happy to inform that I've implemented your suggestion to add navigation links at workflow pages. Feel free to have a look at the working prototype under https://www.bioconductor.org/help/workflows/testproj/testfile/ The new workflow-rendering engine which includes the navigation lin

Re: [Bioc-devel] improving navigation within workflows

2017-07-17 Thread Aaron Lun
Hi Andrzej, Interesting. I also didn't realize that we could get figure referencing via bookdown, that's nice to know. I was thinking that the floating TOC could go onto the right margin, but I guess that doesn't fit anymore now that you have the footnotes and figure captions. CRAN-style links

Re: [Bioc-devel] improving navigation within workflows

2017-07-16 Thread Andrzej Oleś
Hi Aaron, thanks for your feedback. We are currently looking into ways of improving the building of workflows for the website in order to enable cross references, html widgets, and similar. So far these were not supported because of some technical constraints of the current implementation which in

Re: [Bioc-devel] improving navigation within workflows

2017-07-16 Thread Aaron Lun
Indeed, that's exactly what I was thinking of. I have a floating TOC in my own Rmarkdown files, but I'm not sure if it's supported by the workflow builder, given that it adds a separate hyperlinked TOC to the start of the workflow page. On 16/07/17 19:29, Vincent Carey wrote: > like this? > >

Re: [Bioc-devel] improving navigation within workflows

2017-07-16 Thread Vincent Carey
like this? http://bioconductor.org/packages/release/bioc/vignettes/BiocStyle/inst/doc/AuthoringRmdVignettes.html On Sun, Jul 16, 2017 at 11:53 AM, Aaron Lun wrote: > Hello all, > > I was wondering if there's any plans to improve the navigation for the > BioC workflows. I was looking at my simpl

Re: [Bioc-devel] improving navigation within workflows

2017-07-16 Thread Aaron Lun
Hello all, I was wondering if there's any plans to improve the navigation for the BioC workflows. I was looking at my simpleSingleCell workflow: https://www.bioconductor.org/help/workflows/simpleSingleCell/ ... and I've realized that it's gotten pretty long. It's a pain to keep on scrolling up