RE: [Biojava-l] A Simple Genbank Parser Runs Out of Memory

2002-03-03 Thread Schreiber, Mark
Interesting ... What was the file causing the problem?. If it represented a very large sequence then it would require a large memory allocation while it was being processed. If the required allocation was larger than the memory available to the JVM them garbage collection wouldn't help it. Mark

Re: [Biojava-l] RevCompSequence - call for input

2002-03-03 Thread Thomas Down
On Fri, Mar 01, 2002 at 08:07:56PM -0800, David Waring wrote: > I am creating a new class: RevCompSequence to allow reverse complementing of > Sequence with all of its Features. It uses a ProjectedFeatureHolder to > project the features. I have included a createFeature(Feature.Template) > method w

Re: [Biojava-l] java1.3.1 or older...

2002-03-03 Thread Thomas Down
On Fri, Mar 01, 2002 at 09:32:06AM -0800, Geetha Vasudevan wrote: > I have java 1.3.1 and all the biojava demo work fine. I am wondering if > I would > encounter problems when I tie the application as a web-interface, using > netscape. Does > netscape (even latest) have problems displaying the jav