Cool. Looks good. Commit away. Could you add some javadocs (class &
constructor)?
Matthew
Singh, Nimesh wrote:
> I've created a class called AlignmentSequenceIterator that I intend to put in
>the org.biojava.bio.seq package. It will do the real work. I've also added
> public Seq
On Wed, Jul 17, 2002 at 11:56:42PM +0100, Matthew Pocock wrote:
>
> So - symbols from infinite alpahbets are now cannonicalized. If you get
> the Symbol instance for 365 from IntegerAlphabet seven times, you will
> get the same object 7 times. This makes life much easer for things like
> proba
I've created a class called AlignmentSequenceIterator that I intend to put in the
org.biojava.bio.seq package. It will do the real work. I've also added
public SequenceIterator sequenceIterator() {
return new AlignmentSequenceIterator(this);
}
to each alignment
Shailesh L Mistry wrote:
>
> do you have a list of specific things you need looking into?
>
> Shelly.
>
The top two things from my point of view are:
a) phylogenetic trees - object model for trees, some simple algorithms
and IO filters
b) emboss integration - launch emboss apps either via c
Hi Matthew,
> What are you interested in? Is there anything that you would like
> BioJava to do that it doesn't?
I am an ex-Sanger person trying to keep my hand in and help out where I can.
I had some free time a while back and helped out with porting Bioperl to NT.
I have just finished some Ja
Hi Shelly,
What are you interested in? Is there anything that you would like
BioJava to do that it doesn't? You could do a quick skim through the
bioperl functionality and see if we are totaly missing any area in
biojava. I don't think we have any code for dealing with phylogenetic
trees. Oh,
Dear Sir/Madame,
My name is Svetlana Savitskaya. I work for Arch/Web Space Station, a
web and software development. We have a business proposal that may be
of interest to you. It is about outsourcing development of IT systems.
Please let me know if you are interested and I'll send you more detai
Hi All,
Can someone please tell me if there is a Biojava todo/wish list?
I checked the web page but could not find it anywhere.
Thanks.
Shelly.
___
Biojava-l mailing list - [EMAIL PROTECTED]
http://biojava.org/mailman/listinfo/biojava-l
On Thursday 18 Jul 2002 8:00 am, Warth,Rainer,LAUSANNE,NRC/BS wrote:
> I have started to use JAVA for my daily work.
> Now I would like to get started with biojava.
> On my WINDOWS 2000 laptop I have dowloaded the biojava.jar, bytecode.jar,
> xerces.jar into the c:\biojava directory. Then added th
