[Biojava-l] Genbank SeqIO question

2002-07-29 Thread Neill White
Hello- I'm a new user of biojava and have a small problem that I'm hoping someone can help me with - that is, I'm trying to read in and write out genbank files such that what I write out is somewhat close to what I read in (it's acceptable if some info is lost - not all parsers are perfect). T

RE: [Biojava-l] adding toSequenceIterator method for Alignment

2002-07-29 Thread Singh, Nimesh
Given any implementation of an alignment, there is no guarantee that the alignment will have links to the original underlying sequences. I think that the AlignmentSequenceIterator can only use public functions from the Alignment interface. This ensures that it will work for any implementation

[Biojava-l] Docs from last bootcamp

2002-07-29 Thread David Huen
At long last my server is in the local DMZ so I can now serve the pages that were used in the bootcamp. It can be obtained here:- http://vega.gen.cam.ac.uk/ I cannot guarantee the long -term availability of these pages as the server will eventually be reconfigured. They should be at the above