RE: [Biojava-l] Genbank SeqIO question

Thanks Robin - I was using the latest (1.21) binary. Updating to the current code was a marked improvement. The input and output genbank files nearly match. There is a slight issue with an accumulation of '/JoinType="join"' feature table qualifiers on CDS and mRNA records (i.e., if you read

RE: [Biojava-l] Genbank SeqIO question

Are you using the latest source from the CVS? We should have recently cleaned up a lot of the genbank and msf parsing code. -Robin -Original Message- From: Neill White [mailto:[EMAIL PROTECTED]] Sent: Monday, July 29, 2002 6:30 PM To: [EMAIL PROTECTED] Subject: [Biojava-l] Genbank SeqIO

RE: [Biojava-l] Docs from last bootcamp

Hi, Thanks for making this available at all. I was thinking, if you are concerned about the site going away, any chance it can all be placed on the biojava website, or available as a tarball of some sort for others to grab and host locally/internally? Thanks -Mat -Original Message-

Re: [Biojava-l] Re: Sequence Color Coding

Matthew Pocock wrote: > > cc: biojava-l > > satyanarayana pasupuleti wrote: > > Hi Mathew: > > > > I am new to this group. I tried mailing to the group using > > [EMAIL PROTECTED] but I couldnt see my mail > > in the list. Any clue?? > > Try [EMAIL PROTECTED] and if

Re: [Biojava-l] adding toSequenceIterator method for Alignment

Singh, Nimesh wrote: >Given any implementation of an alignment, there is no guarantee that the alignment >will have links to the original underlying sequences. > I know this might be a bit finicky, and that you are most likely already aware of this. But, An alignment doesnt necesarily hold Seq