[Biojava-l] BioSQL updates

2002-08-18 Thread Thomas Down
Hi... I've just checked in some significant updates to the BioJava-BioSQL code, with an emphasis on improving scalability for large sequences. Noticable changes are: - For large sequences, it no longer loads the whole feature table from the database in one block, but instead pages

Re: [Biojava-l] Java implementation of Smith-Waterman algorithm

2002-08-18 Thread Thomas Down
On Sat, Aug 17, 2002 at 07:28:07AM +, borg collective wrote: > Is there a Java implementation of Smith-Waterman algorithm available on > biojava? I was not able to find any reference to it in the documentation. > If there isn't one, does anyone know where I can obtain the source code for