Hi,
Please give me some name of books which I can use to
learn biojava in depth.
Regards
Monoranjan
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Hi -
I have added some new tutorials to biojava in anger covering writing
GenBanks/EMBL as Fasta, Listing the Annotations of a Sequence and
Filtering sequences based on Annotation.
See http://bioconf.otago.ac.nz/biojava/
As usual any feedback is welcome.
Mark Schreiber PhD
Bioinformatics
AgRese
I should know better, but it's been a while since I've used biojava...
I need to parse an EMBL file, pulling out all the FASTA for organisms of
interest.
in bioperl I would do something like:
$in = Bio::SeqIO->new(-file => "$file" , '-format' => 'EMBL');
$out = Bio::SeqIO->new(-file=> ">$file
Thanks ant clean worked!
> -Original Message-
> From: David Huen [mailto:[EMAIL PROTECTED]]
> Sent: Tuesday, December 10, 2002 5:03 PM
> To: David Waring
> Subject: Re: [Biojava-l] Build failing
>
>
> On Wednesday 11 Dec 2002 12:20 am, David Waring wrote:
>
> I've just done an update wh
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Great! Thanks.
-Original Message-
From: Thomas Down [mailto:[EMAIL PROTECTED]]
Sent: Wednesday, December 11, 2002 8:47 AM
To: Ren, Zhen
Cc: [EMAIL PROTECTED]
Subject: Re: [Biojava-l] SymbolParsers in Alphabet
On Wed, Dec 11, 2002 at 08:19:14AM -0800, Ren, Zhen wrote:
> Thank you for the
On Wed, Dec 11, 2002 at 08:19:14AM -0800, Ren, Zhen wrote:
> Thank you for the suggestion. I made that work. Here is another related question:
>how can I make my own custom alphabet handle the ambiguity symbol X like what the
>predefined protein alphabet does? Thanks.
You can bind a token to
Thank you for the suggestion. I made that work. Here is another related question:
how can I make my own custom alphabet handle the ambiguity symbol X like what the
predefined protein alphabet does? Thanks.
Zhen
-Original Message-
From: Thomas Down [mailto:[EMAIL PROTECTED]]
Sent: Mo
