Hi -
I have committed a fix to CVS for this, please feel free to test it. The
circular stuff is, logically speaking, really weird with many odd
concepts so the more testing the better.
- Mark
> -Original Message-
> From: Yasumasa Shigemoto [mailto:[EMAIL PROTECTED]]
> Sent: Friday, 24
Hi -
There are some deficiencies in the blast parsing API. I know that there
is some reluctance to add new methods to the interface as things will
break, however blast parsing is a core task and it would be v good if we
could make this more functional. One way to get around the interface
thing is
We have built a Java GUI on top of BioJava for cis-regulatory sequence
analysis, especially in higher eukaryotes. It is linked with Ensembl for
the retrieval of genes and intergenic sequences and with several
algorithms for comparative genomics and motif detection (using SOAP web
services).
T
I was successful in getting the BLAST parser to work outlined by the
"BioJava in Anger" doc by changing the version number too 2.0.11 (thank
you Mark Schreiber X2). However, a few of the APIs dont seem to
function i.e. getSequenceID() is not recognized, but I dont think
thats due to the versi
Cool! Did I realy say that? Let's get that 1.3 release out ASAP (since
it was meant to be out in December ;) ). Anybody who hasn't yet should
pick up the 1.3pre1 from http://www.biojava.org/download/binaries/ and
give it a test-drive.
Matthew
Schreiber, Mark wrote:
Hi All,
Just noticed a litt
