hi, I found this bug when using Distrubutions iteratively many times. The problem is that when creating Distrubution objects iteratively computation time for each iteration increases with time.
this is a piece of code that demonstrates the issue:
public class DistributionTest {
public static voi
Hi -
As there is currently no publication the best way would be to put the web address and
the version you are using.
- Mark
> -Original Message-
> From: Sohrab Shah [mailto:[EMAIL PROTECTED]
> Sent: Wednesday, 3 December 2003 1:20 p.m.
> To: [EMAIL PROTECTED]
> Subject: [Biojava-l] r
Hi.
Apologies if this has been posted to the list before, but what is the
preferred way to cite BioJava in a manuscript?
Thanks,
Sohrab
--
| Sohrab Shah [EMAIL PROTECTED] |
| UBC Bioinformatics Centre Tel: 604.875-3869 |
| University of British Colu
Interesting read. There are two sections worthy of comment:
>NCBI is not proposing a new data model, but is simply transliterating
>the data model we have used for the last decade into a different language
for the
>convenience of our users. ASN.1 has a number of specific data types such
Mark writes:
>I suspect you hit the nail on the head when you asked how it was designed
and under what
>standards. My guess at the answers would be, it wasn't and none,
respectively.
That's too bad. Merely submitting an RFC to a wider audience (like this one
for example) could have caught these
This page explains how the DTD's were created:
http://www.ncbi.nlm.nih.gov/IEB/ToolBox/XML/ncbixml.txt
The short version is that the DTD's are transliterations of their ASN.1
data models.
Mike
On Tue, 2 Dec 2003, Bobick, Stephen wrote:
>
> Greetings,
>
> I'm afraid I will not be ans
Hi -
I suspect you hit the nail on the head when you asked how it was designed and under
what standards. My guess at the answers would be, it wasn't and none, respectively.
It's pretty funny if you put the DTD into a tool that automatically makes JAXB style
bindings. You end up with millions of
Greetings,
I'm afraid I will not be answering the poster here, but the message caught
my curiousity and prompted me to take a peek at the BLAST DTD, and
subsequently post this commentary. My question is how was the BLAST DTD
designed and under what standards? I find the choice of element names
Hi -
Your right, this is confusing. It might be best to get the official answer from the
ncbi blast help line:
[EMAIL PROTECTED]
If you could post their response to the list I think others may be interested.
- Mark
> -Original Message-
> From: Jan Würthner [mailto:[EMAIL PROTECTED]
Has anyone used BioJava and ColdFusion together?
I'm playing with the ColdFusion demo and was looking for something useful to
do with it.
Russell Smithies
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Biojava-l mailing list - [EMAIL PROTECTED]
http://biojava.org/mailman/listinfo/biojava-l
I'd like to take this opportunity to thank you, Mark, for managing the
1.3 branch. We must get you beer.
Matthew
Schreiber, Mark wrote:
Hi All -
The biojava 1.3.1 release has finally been posted to the biojava website and is obtainable from http://biojava.org/download/ This represents an inter
Hi folks,
I'm constructing SeqSimilaritySearchSubHit instances from xml formatted NCBI
BLAST results, and I'm getting steadily confused with the query's and
subject's from and to information on one hand and the query's and subject's
strand on the other hand.
The NCBI returns for example:
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