I don't think we capture that property. Why do you want it? If it is the
nucleotide sequence you are after then do something like
seq.sublist(from, to);
seq.seqString();
seq.symbolAt(index);
These are SymbolList methods but a Sequence is an instanceof a SymbolList.
See also the section on sequ
Hi..
Anybody know how to retrieve the annotation property
"ORIGIN"
My code look like this
while(sequences.hasNext()){
try {
seq = sequences.nextSequence();
//Annotation
Annotation anno = seq.getAnnotation();
//print each key value pair
for (Iterator i = anno.keys().iterator(); i.hasNext();
)
OK, there seems to have been a few reasonable objections. The consensus
seems to be we will wait until the end of the year. I think from then on
we will change over for biojava-live.
There was a suggestion of maintaining two branches, one would be a
maintenance of biojava1.4 and only use JDK1.4
Hello all,
I'm new to the list so I have not been following the full discussion and
don't know all the issues - excuse my ignorance.
I don't have any objections to moving to Java 1.5, except I know that some
J2EE application servers (both web tier and business tier (i.e. EJBs)) are
slow adopters
Well okay I'll fly the flag for platforms like Alpha where a 1.5
compatible JVM/compiler does not exist nor ever will. I know from the
BOF at BOSC there were quite a few people who were reporting a similar
situation.
Now if no one else objects to the JDK1.5. move then I'm not going to fly
the
Hi!
I use biojava for the SPICE - protein sequence and structure browser.
http://www.efamily.org.uk/software/dasclients/spice/
This application is launched from within a browser using Java Web Start.
Since many people still are using java 1.4 on their machines I would not
want to force them to
Does SPICE rely on biojava-live? If it only requires biojava1.4 then this
wouldn't be an issue. However, if you are actively building SPICE with
biojava-live (possibly not a good idea) we can keep it as 1.4 for a while.
- Mark
Andreas Prlic <[EMAIL PROTECTED]>
10/06/2005 03:26 PM
