Hello Todd,
This sounds a bit like what the biojava BioIndex code does. You make be
able to use that.
- Mark
Todd Riley <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
02/10/2006 12:02 PM
To: [email protected]
cc: (bcc: Mark Schreiber/GP/Novartis)
Subje
Hello,
I am looking for a RandomAccessFile-like class that can read small,
arbitrary chunks of a very large (like 250K of human DNA) fasta file.
(UCSC chromosomal fasta files contain just 1 sequence for the whole
chromosome). I was hoping that someone may have already written a class
that w
Hello again,
I have attempted to move up from the ProfileHMM class to the HMMER
classes (FullHmmerProfileHMM and HmmerProfileHMM). However, I
immediately get an error when attempting to create the DP matrix passing
in the FullHmmerProfileHMM object.
java.lang.ClassCastException: org.biojava
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