[Biojava-l] blast/hit/hsp/hspsummary/blastlikealignment objects by using biojava eventbased parser

  Hi,   I have done some work on the top of current biojava blast parser. The implementation of the BlastContentHandler class allows to use the eventbased parser in biojava to instantiate blast/hit/hsp/hspsummary/blastlikealignment objects.    It is a very quick implem

RE: [Biojava-l] binary code does not work

*/ XMLReader oParser = (XMLReader) new BlastLikeSAXParser(); //add by bruce ling at tularik ((BlastLikeSAXParser)oParser).setModeLazy(); Thanks. Bruce Ling, Ph.D. Director, Bioinformatics Tularik, Inc -- http://www.tularik.com Email: [EMAIL PROTECTED] Phone: 650-825-7143 fax: 1-435-804

RE: [Biojava-l] need help for SimpleSequenceBuilder class

computer. Thanks again to Greg to help me on this. Thanks. Bruce Ling, Ph.D. Director, Bioinformatics Tularik, Inc -- http://www.tularik.com Email: [EMAIL PROTECTED] Phone: 650-825-7143 fax: 1-435-804-4009 > -Original Message- > From: Cox, Greg [mailto:[EMAIL PROTECTED]]

[Biojava-l] need help for SimpleSequenceBuilder class

Hi, Thomas,   As I saw the doc says you are the author of SimpleSequenceBuilder class, I am asking for help with the following problem?   I am in the way of using biojava GenbankFormat class, the code is as following:    {   SequenceFormat gFormat = new GenbankFormat();   SequenceBuilderFac

RE: [Biojava-l] blast xml parser

:-) - bruce -Original Message- From: Wiepert, Mathieu [mailto:[EMAIL PROTECTED]] Sent: Monday, June 11, 2001 5:24 AM To: '[EMAIL PROTECTED]' Cc: [EMAIL PROTECTED] Subject: RE: [Biojava-l] blast xml parser You know, you are more than welcome to add any functionality you desire. You hav

RE: [Biojava-l] blast xml parser

f its performance. Thanks. Bruce Ling, Ph.D. Tularik, Inc http://www.tularik.com -Original Message- From: Ewan Birney [mailto:[EMAIL PROTECTED]] Sent: Saturday, June 09, 2001 2:35 AM To: xling Cc: Simon Brocklehurst; '[EMAIL PROTECTED]' Subject: RE: [Biojava-l] blast xml parser