[Biojava-l] ClassCastException during ambiguity calcul

2004-01-14 Thread Eric BELLARD
Hi, I'm calculating ambiguity of symbol sets and i've got a class cast exception. I've managed to isolate the bug. The following code triggers the exception: Set lc_set = new HashSet(); SymbolList lc_sequence = DNATools.createDNA("AG"); Iterator l

Re: [Biojava-l] how to calculate consensus from a fasta file

2004-01-14 Thread Eric BELLARD
rtis Institute for Tropical Diseases (NITD) > 1 Science Park Road > #04-14 The Capricorn > Singapore 117528 > > phone +65 6722 2973 > fax +65 6722 2910 > > > > > > Eric BELLARD <[EMAIL PROTECTED]> > Sent by: [EMAIL PROTECTED] > 01/13/2004 09:35

[Biojava-l] how to calculate consensus from a fasta file

2004-01-13 Thread Eric BELLARD
Hi, I'd like to first thank you all for your great job on this project. I'm using biojava in a project to store some sequencing result. In my application the user upload sequences from a fasta file, and I like to build an alignment from it. With your project, I can easily parse the fasta file a