Re: [Biojava-l] Annotation

: (bcc: Mark Schreiber/GP/Novartis) Subject: [Biojava-l] Annotation Hi, I have a problem with Annotation. If I try to add a new Property to an Annotation I get a ChangeVetoException. What can I do? -- Christian Köberle Max Planck Institute for Infection Biology Department: Immuno

Re: [Biojava-l] Annotation

;Christian Köberle" <[EMAIL PROTECTED]> Sent by: [EMAIL PROTECTED] 11/22/2005 09:35 PM To: "Christian Köberle" <[EMAIL PROTECTED]> cc: biojava-l@biojava.org, (bcc: Mark Schreiber/GP/Novartis) Subject:Re: [Biojava-l] Annotation

Re: [Biojava-l] Annotation

Christian Köberle wrote: Hi, I have a problem with Annotation. If I try to add a new Property to an Annotation I get a ChangeVetoException. What can I do? Problem is solved: The Problem was: I have initializide my Object with EMPTY_ANNOTATION. Now I use new SimpleAnnotation() -- Christian

[Biojava-l] Annotation

Hi, I have a problem with Annotation. If I try to add a new Property to an Annotation I get a ChangeVetoException. What can I do? -- Christian Köberle Max Planck Institute for Infection Biology Department: Immunology Schumannstr. 21/22 10117 Berlin Tel: +49 30 28 460 562 e-mail: [EMAIL PROTE

RE: [Biojava-l] Annotation Serialization

Can you send/receive a Map (via Axis) whose inner objects are List? George > -Original Message- > From: Tom Oinn [mailto:[EMAIL PROTECTED] > Sent: 03 October 2003 14:01 > To: Matthew Pocock > Cc: Y D Sun; [EMAIL PROTECTED] > Subject: Re: [Biojava-l] Annota

Re: [Biojava-l] Annotation Serialization

Matthew Pocock wrote: I think what you need to do is write an Axis serializer / deserializer that understands lists and add that to your soap service - it seems odd that Axis doesn't come with one bundled like it does for Map. Um, it does. Either that or my lists have been magically sent by te

Re: [Biojava-l] Annotation Serialization

From: Schreiber, Mark [mailto:[EMAIL PROTECTED] Sent: 03 October 2003 03:13 To: Y D Sun; [EMAIL PROTECTED] Subject: RE: [Biojava-l] Annotation Serialization I'm pretty sure Annotation can Serialize to binary. Can AXIS cope with that? - Mark -Original Message- From: Y D Sun [mai

RE: [Biojava-l] Annotation Serialization

IL PROTECTED] > Subject: RE: [Biojava-l] Annotation Serialization > > > I'm pretty sure Annotation can Serialize to binary. Can AXIS > cope with that? > > - Mark > > -Original Message- > From: Y D Sun [mailto:[EMAIL PROTECTED] >

RE: [Biojava-l] Annotation Serialization

I'm pretty sure Annotation can Serialize to binary. Can AXIS cope with that? - Mark -Original Message- From: Y D Sun [mailto:[EMAIL PROTECTED] Sent: Fri 3/10/2003 6:31 a.m. To: [EMAIL PROTECTED] Cc: Subject: [Biojava-l] Annot

[Biojava-l] Annotation Serialization

Hi, I want to send Annotation via Axis SOAP. Has biojave implemented any Annotation serializer, or is there any custom serializer for Annotation? Annotation has a method asMap() that returns a Map. AXIS can serializer Map. However, the Map of Annotation contains ArrayList objects that AXIS can't s

[Biojava-l] annotation types

Hi. I'm adding isExactInstanceOf to AnnotationType which is the same as isInstanceOf with the additional restriction that there are no extra annotations. E.g. if you have type A { foo => Color, bar => int } and two Annotations B { foo => red, bar => 1 } and C { foo => green, bar => 4, baz =>

[Biojava-l] annotation tools

I know this is a little off topic but I hope someone in these groups can help. I will be starting to annotate human genomic sequences that we are finishing here at the UWGC. I have been looking for tools to run genscan and then blast predicted genes, and eventually (after some human intervention)