Re: [Biojava-l] BioJava on large sequences

2001-09-23 Thread Thomas Down
On Fri, Sep 21, 2001 at 11:45:29PM +0100, David Huen wrote: > On Fri, 21 Sep 2001, Cox, Greg wrote: > > > Has anyone done work with BioJava on very large sequences (i.e. contigs)? > > The types of issues we're thinking about are keeping a sub-set of the > > sequence in memory, but ensuring that t

Re: [Biojava-l] BioJava on large sequences

2001-09-21 Thread David Huen
On Fri, 21 Sep 2001, Cox, Greg wrote: > Has anyone done work with BioJava on very large sequences (i.e. contigs)? > The types of issues we're thinking about are keeping a sub-set of the > sequence in memory, but ensuring that the indices of the bases are accurate. > Has anyone dealt with this? >

[Biojava-l] BioJava on large sequences

2001-09-21 Thread Cox, Greg
Has anyone done work with BioJava on very large sequences (i.e. contigs)? The types of issues we're thinking about are keeping a sub-set of the sequence in memory, but ensuring that the indices of the bases are accurate. Has anyone dealt with this? Greg ___