I was having the same trouble, but it went away when I changed line 138
of FastaFormat to:
char[] cache = new char[512];
Thomas - could this cache be auto-extended to avoid overflows?
Thomas Down wrote:
> On Tue, Mar 05, 2002 at 10:07:11AM +1300, Schreiber, Mark wrote:
>
>>java.io.IOExce
On Tue, Mar 05, 2002 at 10:07:11AM +1300, Schreiber, Mark wrote:
>
> java.io.IOException: Mark invalid
> at java.io.BufferedReader.reset(BufferedReader.java:467)
> at
> org.biojava.bio.seq.io.FastaFormat.readSequenceData(FastaFormat.java:164
> )
> at
> org.biojava.bio.seq.io.Fas
Hi -
When working with small FASTA libraries (in terms of the number of
entries) the following snippet of code works fine,
try{
SequenceIterator i = SeqIOTools.readFastaDNA(new
BufferedReader(new FileReader(f)));
while(i.hasNext()){
Sequence s = i.nextSeque
