[Biojava-l] "error loading ontology terms"

2005-11-29 Thread Felix Dreher
Hello, I'm referring to the BioSQL-Database-Problem, which I described last week. I had a problem with the exception "error loading ontology terms" when trying to add a Sequence to the DB. At that time I used Biojava1.4. As I was advised, I installed the latest CVS-update today and now the data

Re: [Biojava-l] Error loading ontology terms

2005-11-25 Thread Francois Pepin
I've applied the patch in the cvs. It compiles and runs the test but I don't have a bioSQL database handy to test that particular bug. Francois On Thu, 2005-11-24 at 15:29 +, Matthew Pocock wrote: > We had the same problem. We fixed it in a copy of biojava, but my cvs account > has been susp

RE: [Biojava-l] Error loading ontology terms

2005-11-24 Thread Richard HOLLAND
ojava.org > Cc: Felix Dreher > Subject: Re: [Biojava-l] Error loading ontology terms > > > We had the same problem. We fixed it in a copy of biojava, > but my cvs account > has been suspended. Somebody there with commit privilages > that will roll our > fix back i

Re: [Biojava-l] Error loading ontology terms

2005-11-24 Thread Matthew Pocock
We had the same problem. We fixed it in a copy of biojava, but my cvs account has been suspended. Somebody there with commit privilages that will roll our fix back in? Matthew On Thursday 24 November 2005 13:51, Felix Dreher wrote: > Hello, > > we have a problem with the connection to a BioSQL

[Biojava-l] Error loading ontology terms

2005-11-24 Thread Felix Dreher
Hello, we have a problem with the connection to a BioSQL Database. When we start our application for the very first time and try to connect to the Database, it throws an SQLException "Connection is closed." After that, when we simply repeat the process, everything works fine and one can store S