AIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
02/15/2006 04:56 PM
To: biojava-l@biojava.org
cc: (bcc: Mark Schreiber/GP/Novartis)
Subject: Re: [Biojava-l] Genbank parser error [biojavax]
Hello again,
I have continued using the Genbank parser, but this time with G
Re: [Biojava-l] Genbank parser error [biojavax]
Hello again,
I have continued using the Genbank parser, but this time with Genbank
files coming from NCBI :)
I really appreciate the example from the documentation that converts a
Genbank file into an EMBL file. I have to say, it is really easy
problem.
- Mark
Morgane THOMAS-CHOLLIER <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
02/14/2006 09:33 PM
To: biojava-l@biojava.org
cc: (bcc: Mark Schreiber/GP/Novartis)
Subject: Re: [Biojava-l] Genbank parser error [biojavax]
Hello Mark,
My f
va.org
cc: (bcc: Mark Schreiber/GP/Novartis)
Subject: Re: [Biojava-l] Genbank parser error [biojavax]
Hello Mark,
My file is indeed too large to be posted.
So I have exported a smaller sequence from Ensembl that I tested with
the parser. The behavior is the same.
Yo
GAGAGAGA
3421 GAGAGAGAGA GAGAGAGAGA GAGAGAATGA ATATTT TCACCTTTCC
TCTTCCTCCT
3481 CTCCAA AATCAGTT
//
[EMAIL PROTECTED] wrote:
Hi Morgane -
I have to say that doesn't look much like Genbank : )
The biojavax parser are possibly a bit brittle due to their use of
rege
GAGAGAGAGA
3421 GAGAGAGAGA GAGAGAGAGA GAGAGAATGA ATATTT TCACCTTTCC TCTTCCTCCT
3481 CTCCAA AATCAGTT
//
[EMAIL PROTECTED] wrote:
Hi Morgane -
I have to say that doesn't look much like Genbank : )
The biojavax parser are possibly a bit brittle due to their use of regexps
to recog
chreiber/GP/Novartis)
Subject: [Biojava-l] Genbank parser error [biojavax]
Hello,
I have tried biojavax today with a view to use the Genbank file parser.
My test file is a Genbank formatted file which has been produced by
Ensembl export system.
The head of the file is as foll
Hello,
I have tried biojavax today with a view to use the Genbank file parser.
My test file is a Genbank formatted file which has been produced by
Ensembl export system.
The head of the file is as follow :
LOCUS 6 489671 bp DNA HTG 13-FEB-2006
DEFINITION Mus musculus chromosome 6 NCBI
