RE: [Biojava-l] How to read in an aligment and then start viterbi

2005-05-18 Thread Richard HOLLAND
to any other person. Thank you. - > -Original Message- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] On Behalf Of > Fabian Schreiber > Sent: Thursday, May 19, 2005 12:17 AM > To: biojava-l@biojava.org > Subject: [Bio

[Biojava-l] How to read in an aligment and then start viterbi

2005-05-18 Thread Fabian Schreiber
Hello! I created a Hmm with an Alphabet, that contains 9 different Proteins such as ALA, ARG, etc. After i created this model, i want to read in an aligment from a file and start Viterbi with the aligment as input. When i do so, i always get the following error: [code] org.biojava.bio.symbol.Illega